DUXAP7 (double homeobox A pseudogene 7) - Rat Genome Database

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Gene: DUXAP7 (double homeobox A pseudogene 7) Homo sapiens
Analyze
Symbol: DUXAP7
Name: double homeobox A pseudogene 7
RGD ID: 1605463
HGNC Page HGNC:32186
Description: Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DUXA homeobox gene family. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: DUXA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382018,642,310 - 18,643,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2018,642,782 - 18,643,634 (-)EnsemblGRCh38hg38GRCh38
GRCh372018,622,954 - 18,624,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362018,570,854 - 18,572,383 (-)NCBINCBI36Build 36hg18NCBI36
Celera2018,697,033 - 18,698,380 (-)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2018,584,965 - 18,586,312 (-)NCBIHuRef
CHM1_12018,622,968 - 18,624,305 (-)NCBICHM1_1
T2T-CHM13v2.02018,693,332 - 18,694,674 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:96
Interacting mature miRNAs:98
Transcripts:ENST00000431038
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 3
Low 9 27 38 1 71 1 96 6 87 26 47 37 12 69
Below cutoff 1026 940 739 159 438 78 1920 675 1749 165 698 764 86 541 1169 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000431038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2018,642,782 - 18,643,634 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DUXAP7 COSMIC
Ensembl Genes ENSG00000232136 Ensembl
GTEx ENSG00000232136 GTEx
HGNC ID HGNC:32186 ENTREZGENE
Human Proteome Map DUXAP7 Human Proteome Map
NCBI Gene 503636 ENTREZGENE
PharmGKB PA142671931 PharmGKB