UBE2W (ubiquitin conjugating enzyme E2 W) - Rat Genome Database

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Gene: UBE2W (ubiquitin conjugating enzyme E2 W) Homo sapiens
Analyze
Symbol: UBE2W
Name: ubiquitin conjugating enzyme E2 W
RGD ID: 1605362
HGNC Page HGNC:25616
Description: Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Involved in several processes, including antiviral innate immune response; negative regulation of TORC1 signaling; and protein ubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: E2 ubiquitin-conjugating enzyme W; FLJ11011; hUBC-16; N-terminal E2 ubiquitin-conjugating enzyme; N-terminus-conjugating E2; probable ubiquitin-conjugating enzyme E2 W; UBC-16; UBC16; ubiquitin carrier protein W; ubiquitin conjugating enzyme E2 W (putative); ubiquitin conjugating enzyme E2W (putative); ubiquitin-conjugating enzyme 16; ubiquitin-conjugating enzyme 2W; ubiquitin-conjugating enzyme E2 W; ubiquitin-conjugating enzyme E2W (putative); ubiquitin-protein ligase W
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: UBE2WP1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,780,096 - 73,878,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,780,097 - 73,878,910 (-)EnsemblGRCh38hg38GRCh38
GRCh37874,692,331 - 74,791,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,865,394 - 74,953,664 (-)NCBINCBI36Build 36hg18NCBI36
Celera870,700,536 - 70,788,851 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,183,231 - 70,282,286 (-)NCBIHuRef
CHM1_1874,744,393 - 74,843,228 (-)NCBICHM1_1
T2T-CHM13v2.0874,209,518 - 74,308,222 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IC)
membrane  (IEA)
nucleoplasm  (TAS)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16169070   PMID:16344560   PMID:16368532   PMID:17597759   PMID:17873885   PMID:19111657   PMID:19322201   PMID:19549727  
PMID:19690564   PMID:19712108   PMID:19851334   PMID:20061386   PMID:21113135   PMID:21229326   PMID:21516116   PMID:21518764   PMID:21855799   PMID:21873635   PMID:21900206   PMID:21965653  
PMID:22157707   PMID:23509263   PMID:23560854   PMID:23696636   PMID:25416956   PMID:25436519   PMID:25527291   PMID:26010904   PMID:26101372   PMID:26186194   PMID:26601958   PMID:26752685  
PMID:27185577   PMID:27425610   PMID:28514442   PMID:28681414   PMID:28757353   PMID:29626159   PMID:30017913   PMID:30097011   PMID:30503508   PMID:31120930   PMID:31515488   PMID:31518613  
PMID:32265276   PMID:32296183   PMID:32393512   PMID:32401531   PMID:32814053   PMID:33650289   PMID:33931024   PMID:33961781   PMID:34326324   PMID:35671810   PMID:35802537   PMID:35893676  
PMID:35927303   PMID:36481767   PMID:36593310   PMID:36758106   PMID:36807144   PMID:37061529  


Genomics

Comparative Map Data
UBE2W
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,780,096 - 73,878,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,780,097 - 73,878,910 (-)EnsemblGRCh38hg38GRCh38
GRCh37874,692,331 - 74,791,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,865,394 - 74,953,664 (-)NCBINCBI36Build 36hg18NCBI36
Celera870,700,536 - 70,788,851 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,183,231 - 70,282,286 (-)NCBIHuRef
CHM1_1874,744,393 - 74,843,228 (-)NCBICHM1_1
T2T-CHM13v2.0874,209,518 - 74,308,222 (-)NCBIT2T-CHM13v2.0
Ube2w
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,611,012 - 16,689,676 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,611,014 - 16,689,713 (-)EnsemblGRCm39 Ensembl
GRCm38116,540,788 - 16,619,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,540,790 - 16,619,489 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,559,487 - 16,609,367 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,526,003 - 16,604,552 (-)NCBIMGSCv36mm8
Celera116,504,336 - 16,554,118 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.1NCBI
Ube2w
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr857,474,039 - 7,531,526 (+)NCBIGRCr8
mRatBN7.252,690,742 - 2,754,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl52,690,763 - 2,814,965 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx54,809,437 - 4,866,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.056,448,307 - 6,505,681 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,146,865 - 6,210,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0529,798,845 - 29,812,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0534,472,319 - 34,486,175 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera52,336,460 - 2,372,026 (+)NCBICelera
Cytogenetic Map5q11NCBI
Ube2w
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,454,049 - 6,509,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,454,043 - 6,536,719 (+)NCBIChiLan1.0ChiLan1.0
UBE2W
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,524,113 - 89,621,494 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1865,150,278 - 65,250,126 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0870,315,767 - 70,413,148 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1871,961,890 - 72,060,302 (-)NCBIpanpan1.1PanPan1.1panPan2
UBE2W
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12922,307,192 - 22,409,667 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,562,785 - 22,674,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02922,409,252 - 22,520,281 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2922,418,141 - 22,520,274 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,466,366 - 22,579,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,503,280 - 22,614,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02922,784,924 - 22,897,619 (-)NCBIUU_Cfam_GSD_1.0
Ube2w
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,872,773 - 56,930,638 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366482,521,432 - 2,575,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366482,517,951 - 2,575,805 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2W
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,014,059 - 62,098,400 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,046,568 - 62,084,679 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2467,752,434 - 67,790,546 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2W
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,394,506 - 69,477,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,407,868 - 69,477,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,895,050 - 71,967,456 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2w
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474417,328,604 - 17,407,817 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474417,314,249 - 17,485,193 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBE2W
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.11-21.13(chr8:73519300-82655582)x1 copy number loss See cases [RCV000051117] Chr8:73519300..82655582 [GRCh38]
Chr8:74431535..83567817 [GRCh37]
Chr8:74594089..83730372 [NCBI36]
Chr8:8q21.11-21.13		 pathogenic
GRCh38/hg38 8q12.1-21.13(chr8:57361243-79170078)x3 copy number gain See cases [RCV000053653] Chr8:57361243..79170078 [GRCh38]
Chr8:58273802..80082313 [GRCh37]
Chr8:58436356..80244868 [NCBI36]
Chr8:8q12.1-21.13		 pathogenic
GRCh38/hg38 8q12.3-21.13(chr8:61691800-82537696)x3 copy number gain See cases [RCV000053654] Chr8:61691800..82537696 [GRCh38]
Chr8:62604359..83449931 [GRCh37]
Chr8:62766913..83612486 [NCBI36]
Chr8:8q12.3-21.13		 pathogenic
GRCh38/hg38 8q13.3-21.11(chr8:70948393-74353284)x3 copy number gain See cases [RCV000053655] Chr8:70948393..74353284 [GRCh38]
Chr8:71860628..75265519 [GRCh37]
Chr8:72023182..75428074 [NCBI36]
Chr8:8q13.3-21.11		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q13.1-22.1(chr8:66171669-93505509)x3 copy number gain See cases [RCV000137050] Chr8:66171669..93505509 [GRCh38]
Chr8:67083904..94517737 [GRCh37]
Chr8:67246458..94586913 [NCBI36]
Chr8:8q13.1-22.1		 pathogenic
GRCh38/hg38 8q13.1-21.13(chr8:66633845-80100089)x3 copy number gain See cases [RCV000138027] Chr8:66633845..80100089 [GRCh38]
Chr8:67546080..81012324 [GRCh37]
Chr8:67708634..81174879 [NCBI36]
Chr8:8q13.1-21.13		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q13.3-21.13(chr8:70971013-82019151)x3 copy number gain See cases [RCV000240367] Chr8:70971013..82019151 [GRCh37]
Chr8:8q13.3-21.13		 likely pathogenic
GRCh37/hg19 8q13.2-24.3(chr8:68912432-146295771)x2 copy number gain See cases [RCV002292707] Chr8:68912432..146295771 [GRCh37]
Chr8:8q13.2-24.3		 pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3		 pathogenic
Single allele deletion Charcot-Marie-Tooth disease axonal type 2K [RCV000678027] Chr8:73876981..74367518 [GRCh38]
Chr8:74789216..75279753 [GRCh37]
Chr8:8q21.11		 uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q21.11(chr8:74742609-74941306)x3 copy number gain not provided [RCV000747660] Chr8:74742609..74941306 [GRCh37]
Chr8:8q21.11		 benign
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771) copy number gain Polydactyly [RCV002280629] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q13.2-24.3(chr8:70382990-146295771) copy number gain not specified [RCV002053772] Chr8:70382990..146295771 [GRCh37]
Chr8:8q13.2-24.3		 pathogenic
GRCh37/hg19 8q21.11(chr8:74515647-75122801)x4 copy number gain not provided [RCV002474943] Chr8:74515647..75122801 [GRCh37]
Chr8:8q21.11		 uncertain significance
GRCh37/hg19 8p21.2-q21.3(chr8:27024288-89410121)x3 copy number gain not specified [RCV003986754] Chr8:27024288..89410121 [GRCh37]
Chr8:8p21.2-q21.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not specified [RCV003986742] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
NM_018299.6(UBE2W):c.214A>G (p.Met72Val) single nucleotide variant not specified [RCV004476907] Chr8:73810626 [GRCh38]
Chr8:74722861 [GRCh37]
Chr8:8q21.11		 uncertain significance
NM_018299.6(UBE2W):c.283C>G (p.Leu95Val) single nucleotide variant not specified [RCV004476908] Chr8:73810557 [GRCh38]
Chr8:74722792 [GRCh37]
Chr8:8q21.11		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6938
Count of miRNA genes:1195
Interacting mature miRNAs:1498
Transcripts:ENST00000419880, ENST00000422906, ENST00000453587, ENST00000517608, ENST00000519255, ENST00000519277, ENST00000523278, ENST00000602593, ENST00000602969
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH45649  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,713,853 - 74,713,985UniSTSGRCh37
Build 36874,876,407 - 74,876,539RGDNCBI36
Celera870,711,556 - 70,711,688RGD
Cytogenetic Map8q21.11UniSTS
HuRef870,204,737 - 70,204,869UniSTS
GeneMap99-GB4 RH Map8390.38UniSTS
RH80693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,705,234 - 74,705,436UniSTSGRCh37
GRCh37196,885,360 - 96,885,564UniSTSGRCh37
Build 36196,657,948 - 96,658,152RGDNCBI36
Celera195,139,684 - 95,139,888RGD
Celera870,702,930 - 70,703,132UniSTS
Cytogenetic Map8q21.11UniSTS
HuRef870,196,111 - 70,196,313UniSTS
HuRef195,007,015 - 95,007,219UniSTS
SHGC-58464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,704,633 - 74,704,806UniSTSGRCh37
Build 36874,867,187 - 74,867,360RGDNCBI36
Celera870,702,329 - 70,702,502RGD
Cytogenetic Map8q21.11UniSTS
HuRef870,195,510 - 70,195,683UniSTS
TNG Radiation Hybrid Map837586.0UniSTS
D8S288E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,741,153 - 74,741,243UniSTSGRCh37
GRCh37874,741,161 - 74,741,338UniSTSGRCh37
Build 36874,903,707 - 74,903,797RGDNCBI36
Celera870,738,852 - 70,738,942RGD
Celera870,738,860 - 70,739,037UniSTS
Cytogenetic Map8q21.11UniSTS
HuRef870,232,023 - 70,232,113UniSTS
HuRef870,232,031 - 70,232,208UniSTS
TNG Radiation Hybrid Map837599.0UniSTS
Stanford-G3 RH Map83048.0UniSTS
NCBI RH Map8844.9UniSTS
GeneMap99-G3 RH Map83138.0UniSTS
SHGC-110342  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,750,262 - 74,750,610UniSTSGRCh37
Build 36874,912,816 - 74,913,164RGDNCBI36
Celera870,747,960 - 70,748,308RGD
Cytogenetic Map8q21.11UniSTS
HuRef870,241,126 - 70,241,474UniSTS
TNG Radiation Hybrid Map837610.0UniSTS
SHGC-110674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,748,102 - 74,748,446UniSTSGRCh37
Build 36874,910,656 - 74,911,000RGDNCBI36
Celera870,745,800 - 70,746,144RGD
Cytogenetic Map8q21.11UniSTS
HuRef870,238,966 - 70,239,310UniSTS
TNG Radiation Hybrid Map837613.0UniSTS
STS-AA025113  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,698,502 - 74,698,720UniSTSGRCh37
Build 36874,861,056 - 74,861,274RGDNCBI36
Celera870,696,196 - 70,696,414RGD
Cytogenetic Map8q21.11UniSTS
HuRef870,189,389 - 70,189,607UniSTS
GeneMap99-GB4 RH Map8344.8UniSTS
GDB:434012  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q31.2-q33.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p21.3-p13.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map14q31UniSTS
fb73f06.x1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37874,753,639 - 74,754,229UniSTSGRCh37
Celera870,751,338 - 70,751,928UniSTS
HuRef870,244,454 - 70,245,044UniSTS
D8S288E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.11UniSTS
TNG Radiation Hybrid Map837599.0UniSTS
Stanford-G3 RH Map83048.0UniSTS
NCBI RH Map8844.9UniSTS
GeneMap99-G3 RH Map83138.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 224 898 214 46 430 48 1223 189 979 180 612 654 13 1 249 829 2
Low 2215 2090 1512 578 1519 417 3134 2007 2755 238 848 959 161 954 1959 4 2
Below cutoff 3 2 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC022826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC022868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY948289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU155172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA352184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000419880   ⟹   ENSP00000397453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,792,363 - 73,878,909 (-)Ensembl
RefSeq Acc Id: ENST00000422906   ⟹   ENSP00000414771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,790,605 - 73,878,875 (-)Ensembl
RefSeq Acc Id: ENST00000517608   ⟹   ENSP00000428813
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,786,220 - 73,878,910 (-)Ensembl
RefSeq Acc Id: ENST00000519255   ⟹   ENSP00000429136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,794,042 - 73,878,860 (-)Ensembl
RefSeq Acc Id: ENST00000519277   ⟹   ENSP00000430254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,793,824 - 73,878,854 (-)Ensembl
RefSeq Acc Id: ENST00000523278   ⟹   ENSP00000428835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,780,097 - 73,830,474 (-)Ensembl
RefSeq Acc Id: ENST00000602593   ⟹   ENSP00000473561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,786,219 - 73,878,862 (-)Ensembl
RefSeq Acc Id: ENST00000650817   ⟹   ENSP00000498255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,786,220 - 73,878,910 (-)Ensembl
RefSeq Acc Id: ENST00000651945   ⟹   ENSP00000499153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,792,363 - 73,878,862 (-)Ensembl
RefSeq Acc Id: NM_001001481   ⟹   NP_001001481
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,786,219 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
Build 36874,865,394 - 74,953,664 (-)NCBI Archive
Celera870,700,536 - 70,788,851 (-)RGD
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,750,511 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,215,634 - 74,308,222 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271015   ⟹   NP_001257944
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,780,096 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,744,393 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,209,518 - 74,308,222 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018299   ⟹   NP_060769
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,786,219 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
Build 36874,865,394 - 74,953,664 (-)NCBI Archive
Celera870,700,536 - 70,788,851 (-)RGD
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,750,511 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,215,634 - 74,308,222 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073119
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,786,219 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,750,511 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,215,634 - 74,308,222 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073120
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,786,219 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,750,511 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,215,634 - 74,308,222 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073121
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,786,219 - 73,878,862 (-)NCBI
GRCh37874,692,332 - 74,791,145 (-)NCBI
HuRef870,183,231 - 70,282,286 (-)NCBI
CHM1_1874,750,511 - 74,843,228 (-)NCBI
T2T-CHM13v2.0874,215,634 - 74,308,222 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_060769   ⟸   NM_018299
- Peptide Label: isoform 2
- UniProtKB: Q9HAG6 (UniProtKB/Swiss-Prot),   Q9H823 (UniProtKB/Swiss-Prot),   Q96B02 (UniProtKB/Swiss-Prot),   Q1XBE0 (UniProtKB/Swiss-Prot),   B4DIV1 (UniProtKB/Swiss-Prot),   Q9NV07 (UniProtKB/Swiss-Prot),   H3BMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001001481   ⟸   NM_001001481
- Peptide Label: isoform 1
- UniProtKB: H3BMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257944   ⟸   NM_001271015
- Peptide Label: isoform 3
- UniProtKB: Q96FI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000428813   ⟸   ENST00000517608
RefSeq Acc Id: ENSP00000429136   ⟸   ENST00000519255
RefSeq Acc Id: ENSP00000430254   ⟸   ENST00000519277
RefSeq Acc Id: ENSP00000498255   ⟸   ENST00000650817
RefSeq Acc Id: ENSP00000499153   ⟸   ENST00000651945
RefSeq Acc Id: ENSP00000428835   ⟸   ENST00000523278
RefSeq Acc Id: ENSP00000397453   ⟸   ENST00000419880
RefSeq Acc Id: ENSP00000473561   ⟸   ENST00000602593
RefSeq Acc Id: ENSP00000414771   ⟸   ENST00000422906
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96B02-F1-model_v2 AlphaFold Q96B02 1-151 view protein structure

Promoters
RGD ID:7213543
Promoter ID:EPDNEW_H12516
Type:initiation region
Name:UBE2W_4
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12517  EPDNEW_H12518  EPDNEW_H12519  EPDNEW_H12520  EPDNEW_H12521  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,791,419 - 73,791,479EPDNEW
RGD ID:7213541
Promoter ID:EPDNEW_H12517
Type:initiation region
Name:UBE2W_5
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12516  EPDNEW_H12518  EPDNEW_H12519  EPDNEW_H12520  EPDNEW_H12521  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,792,858 - 73,792,918EPDNEW
RGD ID:7213545
Promoter ID:EPDNEW_H12518
Type:initiation region
Name:UBE2W_6
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12517  EPDNEW_H12516  EPDNEW_H12519  EPDNEW_H12520  EPDNEW_H12521  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,825,203 - 73,825,263EPDNEW
RGD ID:7213547
Promoter ID:EPDNEW_H12519
Type:multiple initiation site
Name:UBE2W_2
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12517  EPDNEW_H12516  EPDNEW_H12518  EPDNEW_H12520  EPDNEW_H12521  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,830,483 - 73,830,543EPDNEW
RGD ID:7213549
Promoter ID:EPDNEW_H12520
Type:initiation region
Name:UBE2W_3
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12517  EPDNEW_H12516  EPDNEW_H12518  EPDNEW_H12519  EPDNEW_H12521  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,870,430 - 73,870,490EPDNEW
RGD ID:7213551
Promoter ID:EPDNEW_H12521
Type:initiation region
Name:UBE2W_1
Description:ubiquitin conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12517  EPDNEW_H12516  EPDNEW_H12518  EPDNEW_H12519  EPDNEW_H12520  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38873,878,860 - 73,878,920EPDNEW
RGD ID:6807093
Promoter ID:HG_KWN:61532
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001001481,   NM_018299,   UC003XZT.2,   UC003XZW.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36874,953,491 - 74,953,991 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25616 AgrOrtholog
COSMIC UBE2W COSMIC
Ensembl Genes ENSG00000104343 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000258677 UniProtKB/TrEMBL
Ensembl Transcript ENST00000358757.5 UniProtKB/TrEMBL
  ENST00000419880.7 UniProtKB/TrEMBL
  ENST00000422906.6 UniProtKB/TrEMBL
  ENST00000517608.5 UniProtKB/Swiss-Prot
  ENST00000519255.2 UniProtKB/TrEMBL
  ENST00000519277.5 UniProtKB/TrEMBL
  ENST00000523278 ENTREZGENE
  ENST00000523278.5 UniProtKB/TrEMBL
  ENST00000602593 ENTREZGENE
  ENST00000602593.6 UniProtKB/Swiss-Prot
  ENST00000650817 ENTREZGENE
  ENST00000650817.1 UniProtKB/TrEMBL
  ENST00000651945.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000104343 GTEx
  ENSG00000258677 GTEx
HGNC ID HGNC:25616 ENTREZGENE
Human Proteome Map UBE2W Human Proteome Map
InterPro UBQ-conjugat_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55284 UniProtKB/Swiss-Prot
NCBI Gene 55284 ENTREZGENE
OMIM 614277 OMIM
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 W UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142670657 PharmGKB
PROSITE UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBCc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DIV1 ENTREZGENE
  E5RG25_HUMAN UniProtKB/TrEMBL
  H0YB73_HUMAN UniProtKB/TrEMBL
  H3BMM0 ENTREZGENE, UniProtKB/TrEMBL
  Q1XBE0 ENTREZGENE
  Q96B02 ENTREZGENE
  Q96FI0 ENTREZGENE, UniProtKB/TrEMBL
  Q9H823 ENTREZGENE
  Q9HAG6 ENTREZGENE
  Q9NV07 ENTREZGENE
  UBE2W_HUMAN UniProtKB/Swiss-Prot
  X6REH9_HUMAN UniProtKB/TrEMBL
UniProt Secondary B4DIV1 UniProtKB/Swiss-Prot
  Q1XBE0 UniProtKB/Swiss-Prot
  Q9H823 UniProtKB/Swiss-Prot
  Q9HAG6 UniProtKB/Swiss-Prot
  Q9NV07 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-12-20 UBE2W  ubiquitin conjugating enzyme E2 W    ubiquitin conjugating enzyme E2 W (putative)  Symbol and/or name change 5135510 APPROVED
2016-03-21 UBE2W  ubiquitin conjugating enzyme E2 W (putative)    ubiquitin conjugating enzyme E2W (putative)  Symbol and/or name change 5135510 APPROVED
2015-11-24 UBE2W  ubiquitin conjugating enzyme E2W (putative)    ubiquitin-conjugating enzyme E2W (putative)  Symbol and/or name change 5135510 APPROVED
2012-09-19 UBE2W  ubiquitin-conjugating enzyme E2W (putative)  UBE2W  ubiquitin-conjugating enzyme E2W (putative)  Symbol and/or name change 5135510 APPROVED