TTC31 (tetratricopeptide repeat domain 31) - Rat Genome Database

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Gene: TTC31 (tetratricopeptide repeat domain 31) Homo sapiens
Analyze
Symbol: TTC31
Name: tetratricopeptide repeat domain 31
RGD ID: 1605049
HGNC Page HGNC:25759
Description: ASSOCIATED WITH congenital disorder of glycosylation type IIb; Dystonia; dystonia; INTERACTS WITH acrolein; acrylamide; alpha-pinene
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ12788; FLJ33201; MGC120200; tetratricopeptide repeat protein 31; TPR repeat protein 31
RGD Orthologs
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,483,081 - 74,494,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,483,073 - 74,494,559 (+)EnsemblGRCh38hg38GRCh38
GRCh37274,710,208 - 74,721,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,563,724 - 74,575,191 (+)NCBINCBI36Build 36hg18NCBI36
Celera274,541,365 - 74,552,855 (+)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,446,461 - 74,457,952 (+)NCBIHuRef
CHM1_1274,639,609 - 74,651,101 (+)NCBICHM1_1
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Dystonia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16751776   PMID:21790010   PMID:24104479   PMID:26186194   PMID:26496610   PMID:28514442   PMID:29395067   PMID:30995489  
PMID:32994395   PMID:33961781   PMID:35140242   PMID:37689310  


Genomics

Comparative Map Data
TTC31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,483,081 - 74,494,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,483,073 - 74,494,559 (+)EnsemblGRCh38hg38GRCh38
GRCh37274,710,208 - 74,721,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,563,724 - 74,575,191 (+)NCBINCBI36Build 36hg18NCBI36
Celera274,541,365 - 74,552,855 (+)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,446,461 - 74,457,952 (+)NCBIHuRef
CHM1_1274,639,609 - 74,651,101 (+)NCBICHM1_1
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBIT2T-CHM13v2.0
Ttc31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,295,222 - 11,304,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,297,666 - 11,304,937 (-)NCBIChiLan1.0ChiLan1.0
TTC31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,892,695 - 51,906,189 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,895,442 - 51,908,925 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,549,680 - 74,563,164 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,056,421 - 76,067,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,056,437 - 76,067,481 (+)Ensemblpanpan1.1panPan2
TTC31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,647,765 - 48,655,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,647,504 - 48,656,066 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,289,624 - 48,297,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,505,656 - 49,514,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,505,678 - 49,514,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,522,779 - 48,531,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,589,530 - 48,598,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,147,247 - 49,156,265 (-)NCBIUU_Cfam_GSD_1.0
Ttc31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,028,833 - 10,036,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556701,037 - 709,302 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556700,972 - 709,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,555,232 - 68,564,007 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,555,230 - 68,570,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,880,252 - 71,888,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,783,336 - 32,795,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,784,347 - 32,795,106 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,376,022 - 79,387,964 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,018,219 - 29,026,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC31
31 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_022492.4(TTC31):c.351C>T (p.Pro117=) single nucleotide variant Malignant melanoma [RCV000065680] Chr2:74490362 [GRCh38]
Chr2:74717489 [GRCh37]
Chr2:74570997 [NCBI36]
Chr2:2p13.1		 not provided
NM_032779.3(CCDC142):c.1413G>A (p.Glu471=) single nucleotide variant Malignant melanoma [RCV000065679] Chr2:74480838 [GRCh38]
Chr2:74707965 [GRCh37]
Chr2:74561473 [NCBI36]
Chr2:2p13.1		 not provided
GRCh38/hg38 2p16.1-11.2(chr2:58279519-83586962)x3 copy number gain See cases [RCV000136053] Chr2:58279519..83586962 [GRCh38]
Chr2:58506654..83814086 [GRCh37]
Chr2:58360158..83667597 [NCBI36]
Chr2:2p16.1-11.2		 pathogenic
GRCh38/hg38 2p13.1-12(chr2:74432069-75181627)x3 copy number gain See cases [RCV000136651] Chr2:74432069..75181627 [GRCh38]
Chr2:74659196..75408753 [GRCh37]
Chr2:74512704..75262261 [NCBI36]
Chr2:2p13.1-12		 likely benign|uncertain significance
GRCh38/hg38 2p16.3-11.2(chr2:47620388-86702722)x3 copy number gain See cases [RCV000137586] Chr2:47620388..86702722 [GRCh38]
Chr2:47847527..86929845 [GRCh37]
Chr2:47701031..86783356 [NCBI36]
Chr2:2p16.3-11.2		 uncertain significance
GRCh38/hg38 2p25.1-11.2(chr2:7495123-87705899)x3 copy number gain See cases [RCV000141494] Chr2:7495123..87705899 [GRCh38]
Chr2:7635254..88005418 [GRCh37]
Chr2:7552705..87786533 [NCBI36]
Chr2:2p25.1-11.2		 benign
GRCh38/hg38 2p13.1-12(chr2:74375779-75517520)x1 copy number loss See cases [RCV000143456] Chr2:74375779..75517520 [GRCh38]
Chr2:74602906..75744646 [GRCh37]
Chr2:74456414..75598154 [NCBI36]
Chr2:2p13.1-12		 likely pathogenic
GRCh37/hg19 2p13.1(chr2:74707255-74950792)x3 copy number gain See cases [RCV000448878] Chr2:74707255..74950792 [GRCh37]
Chr2:2p13.1		 uncertain significance
GRCh37/hg19 2p15-11.2(chr2:62245236-86978895)x3 copy number gain See cases [RCV000448688] Chr2:62245236..86978895 [GRCh37]
Chr2:2p15-11.2		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p13.1-11.2(chr2:74365484-89129064)x1 copy number loss See cases [RCV000510763] Chr2:74365484..89129064 [GRCh37]
Chr2:2p13.1-11.2		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_022492.6(TTC31):c.947C>T (p.Ala316Val) single nucleotide variant not specified [RCV004305938] Chr2:74492157 [GRCh38]
Chr2:74719284 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.319T>C (p.Cys107Arg) single nucleotide variant not specified [RCV004308594] Chr2:74490330 [GRCh38]
Chr2:74717457 [GRCh37]
Chr2:2p13.1		 uncertain significance
Single allele deletion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3		 likely pathogenic
Single allele duplication not provided [RCV000677942] Chr2:63671346..85698002 [GRCh37]
Chr2:2p15-11.2		 pathogenic
GRCh37/hg19 2p13.1-11.2(chr2:74527522-89125488)x1 copy number loss not provided [RCV000682167] Chr2:74527522..89125488 [GRCh37]
Chr2:2p13.1-11.2		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_022492.6(TTC31):c.416G>T (p.Ser139Ile) single nucleotide variant not specified [RCV004299629] Chr2:74490427 [GRCh38]
Chr2:74717554 [GRCh37]
Chr2:2p13.1		 uncertain significance
NC_000002.11:g.(?_71004499)_(74779761_?)del deletion Dystonic disorder [RCV003113211]|Methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency [RCV003113210]|not provided [RCV003107716] Chr2:71004499..74779761 [GRCh37]
Chr2:2p13.3-13.1		 pathogenic|no classifications from unflagged records
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NC_000002.11:g.(?_72359356)_(74779761_?)del deletion MOGS-congenital disorder of glycosylation [RCV003109485]|not provided [RCV003116543] Chr2:72359356..74779761 [GRCh37]
Chr2:2p13.2-13.1		 pathogenic|no classifications from unflagged records
NC_000002.11:g.(?_69240632)_(74779761_?)dup duplication not provided [RCV003122858] Chr2:69240632..74779761 [GRCh37]
Chr2:2p13.3-13.1		 uncertain significance
GRCh37/hg19 2p25.1-q13(chr2:11504318-111365996)x1 copy number loss See cases [RCV002287563] Chr2:11504318..111365996 [GRCh37]
Chr2:2p25.1-q13		 pathogenic
NM_022492.6(TTC31):c.229C>A (p.His77Asn) single nucleotide variant not specified [RCV004305858] Chr2:74490124 [GRCh38]
Chr2:74717251 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.140A>C (p.Asp47Ala) single nucleotide variant not specified [RCV004152958] Chr2:74490035 [GRCh38]
Chr2:74717162 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1106G>A (p.Arg369Gln) single nucleotide variant not specified [RCV004207530] Chr2:74492390 [GRCh38]
Chr2:74719517 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.988C>A (p.Gln330Lys) single nucleotide variant not specified [RCV004130165] Chr2:74492198 [GRCh38]
Chr2:74719325 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1370C>T (p.Pro457Leu) single nucleotide variant not specified [RCV004202227] Chr2:74493028 [GRCh38]
Chr2:74720155 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1510G>T (p.Gly504Cys) single nucleotide variant not specified [RCV004145638] Chr2:74493168 [GRCh38]
Chr2:74720295 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.404G>A (p.Ser135Asn) single nucleotide variant not specified [RCV004139484] Chr2:74490415 [GRCh38]
Chr2:74717542 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.97A>G (p.Lys33Glu) single nucleotide variant not specified [RCV004118990] Chr2:74483378 [GRCh38]
Chr2:74710505 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.145C>T (p.Leu49Phe) single nucleotide variant not specified [RCV004069361] Chr2:74490040 [GRCh38]
Chr2:74717167 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1237C>T (p.Arg413Cys) single nucleotide variant not specified [RCV004185564] Chr2:74492721 [GRCh38]
Chr2:74719848 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.533G>A (p.Arg178Gln) single nucleotide variant not specified [RCV004204738] Chr2:74490726 [GRCh38]
Chr2:74717853 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.834C>G (p.Ser278Arg) single nucleotide variant not specified [RCV004113144] Chr2:74491630 [GRCh38]
Chr2:74718757 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1301C>T (p.Ser434Leu) single nucleotide variant not specified [RCV004179820] Chr2:74492959 [GRCh38]
Chr2:74720086 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1541A>G (p.His514Arg) single nucleotide variant not specified [RCV004193341] Chr2:74493199 [GRCh38]
Chr2:74720326 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.713T>C (p.Val238Ala) single nucleotide variant not specified [RCV004101279] Chr2:74491509 [GRCh38]
Chr2:74718636 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1162C>T (p.Arg388Cys) single nucleotide variant not specified [RCV004221105] Chr2:74492646 [GRCh38]
Chr2:74719773 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1222G>A (p.Ala408Thr) single nucleotide variant not specified [RCV004222366] Chr2:74492706 [GRCh38]
Chr2:74719833 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.127G>A (p.Glu43Lys) single nucleotide variant not specified [RCV004251436] Chr2:74483408 [GRCh38]
Chr2:74710535 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1339G>A (p.Ala447Thr) single nucleotide variant not specified [RCV004249977] Chr2:74492997 [GRCh38]
Chr2:74720124 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.799C>G (p.Leu267Val) single nucleotide variant not specified [RCV004280039] Chr2:74491595 [GRCh38]
Chr2:74718722 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.745C>T (p.Pro249Ser) single nucleotide variant not specified [RCV004282844] Chr2:74491541 [GRCh38]
Chr2:74718668 [GRCh37]
Chr2:2p13.1		 uncertain significance
GRCh37/hg19 2p13.1-12(chr2:73716761-75347894)x1 copy number loss not provided [RCV003223078] Chr2:73716761..75347894 [GRCh37]
Chr2:2p13.1-12		 uncertain significance
NM_022492.6(TTC31):c.472C>T (p.Arg158Cys) single nucleotide variant not specified [RCV004249117] Chr2:74490665 [GRCh38]
Chr2:74717792 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.406G>A (p.Val136Ile) single nucleotide variant not specified [RCV004258565] Chr2:74490417 [GRCh38]
Chr2:74717544 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.505C>T (p.Arg169Cys) single nucleotide variant not specified [RCV004361201] Chr2:74490698 [GRCh38]
Chr2:74717825 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1120C>T (p.Arg374Trp) single nucleotide variant not specified [RCV004338650] Chr2:74492404 [GRCh38]
Chr2:74719531 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1328A>G (p.His443Arg) single nucleotide variant not specified [RCV004337096] Chr2:74492986 [GRCh38]
Chr2:74720113 [GRCh37]
Chr2:2p13.1		 uncertain significance
GRCh37/hg19 2p13.3-12(chr2:71076472-76368354)x1 copy number loss not specified [RCV003986388] Chr2:71076472..76368354 [GRCh37]
Chr2:2p13.3-12		 likely pathogenic
NM_022492.6(TTC31):c.19A>G (p.Thr7Ala) single nucleotide variant not specified [RCV004479182] Chr2:74483114 [GRCh38]
Chr2:74710241 [GRCh37]
Chr2:2p13.1		 likely benign
NM_022492.6(TTC31):c.259G>C (p.Glu87Gln) single nucleotide variant not specified [RCV004479183] Chr2:74490270 [GRCh38]
Chr2:74717397 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.149G>A (p.Arg50Gln) single nucleotide variant not specified [RCV004479180] Chr2:74490044 [GRCh38]
Chr2:74717171 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.1511G>A (p.Gly504Asp) single nucleotide variant not specified [RCV004479181] Chr2:74493169 [GRCh38]
Chr2:74720296 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.328C>T (p.Arg110Cys) single nucleotide variant not specified [RCV004479184] Chr2:74490339 [GRCh38]
Chr2:74717466 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.599C>T (p.Pro200Leu) single nucleotide variant not specified [RCV004479185] Chr2:74491180 [GRCh38]
Chr2:74718307 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.626A>T (p.Asp209Val) single nucleotide variant not specified [RCV004479186] Chr2:74491317 [GRCh38]
Chr2:74718444 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.745C>A (p.Pro249Thr) single nucleotide variant not specified [RCV004479187] Chr2:74491541 [GRCh38]
Chr2:74718668 [GRCh37]
Chr2:2p13.1		 uncertain significance
NM_022492.6(TTC31):c.788A>T (p.Gln263Leu) single nucleotide variant not specified [RCV004479188] Chr2:74491584 [GRCh38]
Chr2:74718711 [GRCh37]
Chr2:2p13.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7474
Count of miRNA genes:1178
Interacting mature miRNAs:1525
Transcripts:ENST00000233623, ENST00000410003, ENST00000414247, ENST00000424122, ENST00000442235, ENST00000449459, ENST00000459957, ENST00000463189, ENST00000463704, ENST00000464241, ENST00000487623, ENST00000489152, ENST00000491252
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
WI-11593  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37274,721,534 - 74,721,683UniSTSGRCh37
Build 36274,575,042 - 74,575,191RGDNCBI36
Celera274,552,698 - 74,552,847RGD
Cytogenetic Map2p13.1UniSTS
HuRef274,457,795 - 74,457,944UniSTS
GeneMap99-GB4 RH Map2224.98UniSTS
Whitehead-RH Map2319.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2362 1620 1634 546 1388 414 3563 1015 1574 270 1425 1551 147 1128 2022 5 2
Low 77 1371 92 78 563 51 793 1182 2160 149 35 62 27 1 76 766 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001376129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_027749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_244952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000233623   ⟹   ENSP00000233623
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,081 - 74,494,559 (+)Ensembl
RefSeq Acc Id: ENST00000410003   ⟹   ENSP00000387213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,087 - 74,494,559 (+)Ensembl
RefSeq Acc Id: ENST00000414247   ⟹   ENSP00000387843
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,491,584 - 74,493,311 (+)Ensembl
RefSeq Acc Id: ENST00000424122   ⟹   ENSP00000388495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,082 - 74,494,559 (+)Ensembl
RefSeq Acc Id: ENST00000442235   ⟹   ENSP00000416823
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,087 - 74,493,083 (+)Ensembl
RefSeq Acc Id: ENST00000449459   ⟹   ENSP00000389127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,087 - 74,493,083 (+)Ensembl
RefSeq Acc Id: ENST00000459957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,101 - 74,491,558 (+)Ensembl
RefSeq Acc Id: ENST00000463189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,105 - 74,491,649 (+)Ensembl
RefSeq Acc Id: ENST00000463704
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,089 - 74,483,705 (+)Ensembl
RefSeq Acc Id: ENST00000464241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,087 - 74,493,083 (+)Ensembl
RefSeq Acc Id: ENST00000487623
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,491,570 - 74,492,813 (+)Ensembl
RefSeq Acc Id: ENST00000489152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,073 - 74,494,559 (+)Ensembl
RefSeq Acc Id: ENST00000491252
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,483,089 - 74,494,559 (+)Ensembl
RefSeq Acc Id: NM_001376129   ⟹   NP_001363058
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376130   ⟹   NP_001363059
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376132   ⟹   NP_001363061
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376133   ⟹   NP_001363062
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376134   ⟹   NP_001363063
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376135   ⟹   NP_001363064
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376136   ⟹   NP_001363065
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376137   ⟹   NP_001363066
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376138   ⟹   NP_001363067
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376139   ⟹   NP_001363068
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376140   ⟹   NP_001363069
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,489,012 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,497,578 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376141   ⟹   NP_001363070
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376144   ⟹   NP_001363073
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376145   ⟹   NP_001363074
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NM_022492   ⟹   NP_071937
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
GRCh37274,710,200 - 74,721,691 (+)RGD
Build 36274,563,724 - 74,575,191 (+)NCBI Archive
Celera274,541,365 - 74,552,855 (+)RGD
HuRef274,446,461 - 74,457,952 (+)RGD
CHM1_1274,639,609 - 74,651,101 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_027749
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
GRCh37274,710,200 - 74,721,691 (+)RGD
Celera274,541,365 - 74,552,855 (+)RGD
HuRef274,446,461 - 74,457,952 (+)RGD
CHM1_1274,639,609 - 74,651,101 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164770
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164771
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164772
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164773
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164774
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533035   ⟹   XP_011531337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047445417   ⟹   XP_047301373
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,345 - 74,494,559 (+)NCBI
RefSeq Acc Id: XM_047445418   ⟹   XP_047301374
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,360 - 74,494,559 (+)NCBI
RefSeq Acc Id: XM_047445419   ⟹   XP_047301375
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,319 - 74,494,559 (+)NCBI
RefSeq Acc Id: XM_047445420   ⟹   XP_047301376
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,489,012 - 74,494,559 (+)NCBI
RefSeq Acc Id: XM_047445421   ⟹   XP_047301377
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,494,559 (+)NCBI
RefSeq Acc Id: XM_047445422   ⟹   XP_047301378
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,492,402 (+)NCBI
RefSeq Acc Id: XM_047445423   ⟹   XP_047301379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,492,297 (+)NCBI
RefSeq Acc Id: XM_047445424   ⟹   XP_047301380
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,081 - 74,492,297 (+)NCBI
RefSeq Acc Id: XM_054343379   ⟹   XP_054199354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343380   ⟹   XP_054199355
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,909 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343381   ⟹   XP_054199356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,924 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343382   ⟹   XP_054199357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,883 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343383   ⟹   XP_054199358
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,497,578 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343384   ⟹   XP_054199359
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBI
RefSeq Acc Id: XM_054343385   ⟹   XP_054199360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,645 - 74,500,966 (+)NCBI
RefSeq Acc Id: XM_054343386   ⟹   XP_054199361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,645 - 74,500,861 (+)NCBI
RefSeq Acc Id: XM_054343387   ⟹   XP_054199362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0274,491,645 - 74,500,861 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001363058 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363059 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363061 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363062 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363064 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363069 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363070 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363073 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363074 (Get FASTA)   NCBI Sequence Viewer  
  NP_071937 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531337 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301373 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301374 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301375 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301376 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301377 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301378 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301379 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301380 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199354 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199355 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199356 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199357 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199358 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199359 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199360 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199361 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199362 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH36017 (Get FASTA)   NCBI Sequence Viewer  
  AAH45536 (Get FASTA)   NCBI Sequence Viewer  
  AAH96709 (Get FASTA)   NCBI Sequence Viewer  
  AAH98365 (Get FASTA)   NCBI Sequence Viewer  
  BAB14272 (Get FASTA)   NCBI Sequence Viewer  
  BAD97075 (Get FASTA)   NCBI Sequence Viewer  
  BAG52176 (Get FASTA)   NCBI Sequence Viewer  
  BAG63076 (Get FASTA)   NCBI Sequence Viewer  
  BAG64213 (Get FASTA)   NCBI Sequence Viewer  
  BAG64329 (Get FASTA)   NCBI Sequence Viewer  
  EAW99638 (Get FASTA)   NCBI Sequence Viewer  
  EAW99639 (Get FASTA)   NCBI Sequence Viewer  
  EAW99640 (Get FASTA)   NCBI Sequence Viewer  
  EAW99641 (Get FASTA)   NCBI Sequence Viewer  
  EAW99642 (Get FASTA)   NCBI Sequence Viewer  
  EAW99643 (Get FASTA)   NCBI Sequence Viewer  
  EAW99644 (Get FASTA)   NCBI Sequence Viewer  
  EAW99645 (Get FASTA)   NCBI Sequence Viewer  
  EAW99646 (Get FASTA)   NCBI Sequence Viewer  
  EAW99647 (Get FASTA)   NCBI Sequence Viewer  
  EAW99648 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000233623
  ENSP00000233623.6
  ENSP00000387213
  ENSP00000387213.1
  ENSP00000387843.1
  ENSP00000388495.1
  ENSP00000389127.1
  ENSP00000416823
  ENSP00000416823.3
GenBank Protein Q49AM3 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_071937   ⟸   NM_022492
- Peptide Label: isoform a
- UniProtKB: Q53FD4 (UniProtKB/Swiss-Prot),   Q4KN40 (UniProtKB/Swiss-Prot),   Q9H9F7 (UniProtKB/Swiss-Prot),   Q49AM3 (UniProtKB/Swiss-Prot),   Q86XF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011531337   ⟸   XM_011533035
- Peptide Label: isoform X1
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001363063   ⟸   NM_001376134
- Peptide Label: isoform f
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363064   ⟸   NM_001376135
- Peptide Label: isoform g
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363059   ⟸   NM_001376130
- Peptide Label: isoform c
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363065   ⟸   NM_001376136
- Peptide Label: isoform h
- UniProtKB: G5E9H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363066   ⟸   NM_001376137
- Peptide Label: isoform i
- UniProtKB: G5E9H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363058   ⟸   NM_001376129
- Peptide Label: isoform b
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363061   ⟸   NM_001376132
- Peptide Label: isoform d
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363062   ⟸   NM_001376133
- Peptide Label: isoform e
- UniProtKB: Q86XF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363067   ⟸   NM_001376138
- Peptide Label: isoform j
RefSeq Acc Id: NP_001363068   ⟸   NM_001376139
- Peptide Label: isoform k
RefSeq Acc Id: NP_001363074   ⟸   NM_001376145
- Peptide Label: isoform o
RefSeq Acc Id: NP_001363070   ⟸   NM_001376141
- Peptide Label: isoform m
RefSeq Acc Id: NP_001363073   ⟸   NM_001376144
- Peptide Label: isoform n
RefSeq Acc Id: NP_001363069   ⟸   NM_001376140
- Peptide Label: isoform l
RefSeq Acc Id: ENSP00000388495   ⟸   ENST00000424122
RefSeq Acc Id: ENSP00000387213   ⟸   ENST00000410003
RefSeq Acc Id: ENSP00000387843   ⟸   ENST00000414247
RefSeq Acc Id: ENSP00000416823   ⟸   ENST00000442235
RefSeq Acc Id: ENSP00000233623   ⟸   ENST00000233623
RefSeq Acc Id: ENSP00000389127   ⟸   ENST00000449459
RefSeq Acc Id: XP_047301377   ⟸   XM_047445421
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047301378   ⟸   XM_047445422
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047301379   ⟸   XM_047445423
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047301380   ⟸   XM_047445424
- Peptide Label: isoform X9
RefSeq Acc Id: XP_047301375   ⟸   XM_047445419
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047301373   ⟸   XM_047445417
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047301374   ⟸   XM_047445418
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047301376   ⟸   XM_047445420
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054199354   ⟸   XM_054343379
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054199359   ⟸   XM_054343384
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054199360   ⟸   XM_054343385
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054199361   ⟸   XM_054343386
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054199362   ⟸   XM_054343387
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054199357   ⟸   XM_054343382
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054199355   ⟸   XM_054343380
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054199356   ⟸   XM_054343381
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054199358   ⟸   XM_054343383
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q49AM3-F1-model_v2 AlphaFold Q49AM3 1-519 view protein structure

Promoters
RGD ID:6860760
Promoter ID:EPDNEW_H3545
Type:multiple initiation site
Name:TTC31_1
Description:tetratricopeptide repeat domain 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,483,087 - 74,483,147EPDNEW
RGD ID:6798361
Promoter ID:HG_KWN:33340
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000410003,   NR_027749,   OTTHUMT00000328422,   OTTHUMT00000328423,   OTTHUMT00000328425,   OTTHUMT00000328427,   OTTHUMT00000328428,   OTTHUMT00000328429,   OTTHUMT00000328431,   UC002SLS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36274,563,476 - 74,563,976 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25759 AgrOrtholog
COSMIC TTC31 COSMIC
Ensembl Genes ENSG00000115282 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000233623 ENTREZGENE
  ENST00000233623.11 UniProtKB/Swiss-Prot
  ENST00000410003 ENTREZGENE
  ENST00000410003.5 UniProtKB/TrEMBL
  ENST00000414247.1 UniProtKB/TrEMBL
  ENST00000424122 ENTREZGENE
  ENST00000424122.5 UniProtKB/TrEMBL
  ENST00000442235 ENTREZGENE
  ENST00000442235.6 UniProtKB/Swiss-Prot
  ENST00000449459.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000115282 GTEx
HGNC ID HGNC:25759 ENTREZGENE
Human Proteome Map TTC31 Human Proteome Map
InterPro TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:64427 UniProtKB/Swiss-Prot
NCBI Gene 64427 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/Swiss-Prot
  TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/Swiss-Prot
  TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/TrEMBL
Pfam TPR_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA145147843 PharmGKB
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F8VVP0_HUMAN UniProtKB/TrEMBL
  G5E9H3 ENTREZGENE, UniProtKB/TrEMBL
  H7BZ54_HUMAN UniProtKB/TrEMBL
  Q49AM3 ENTREZGENE
  Q4KN40 ENTREZGENE
  Q53FD4 ENTREZGENE
  Q86XF2 ENTREZGENE, UniProtKB/TrEMBL
  Q9H9F7 ENTREZGENE
  TTC31_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q4KN40 UniProtKB/Swiss-Prot
  Q53FD4 UniProtKB/Swiss-Prot
  Q9H9F7 UniProtKB/Swiss-Prot