PLPPR2 (phospholipid phosphatase related 2) - Rat Genome Database

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Gene: PLPPR2 (phospholipid phosphatase related 2) Homo sapiens
Analyze
Symbol: PLPPR2
Name: phospholipid phosphatase related 2
RGD ID: 1604322
HGNC Page HGNC:29566
Description: Predicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp761E1121; FLJ13055; inactive phospholipid phosphatase PLPPR2; lipid phosphate phosphatase-related protein type 2; LPPR2; phospholipid phosphatase-related protein type 2; plasticity related gene 4; plasticity-related gene 4 protein; PRG-4; PRG4
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,355,432 - 11,365,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,355,386 - 11,365,698 (+)EnsemblGRCh38hg38GRCh38
GRCh371911,466,108 - 11,476,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,327,109 - 11,337,372 (+)NCBINCBI36Build 36hg18NCBI36
Celera1911,360,936 - 11,371,242 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,042,113 - 11,052,420 (+)NCBIHuRef
CHM1_11911,467,084 - 11,477,386 (+)NCBICHM1_1
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:12477932   PMID:14702039   PMID:14750979   PMID:16344560   PMID:21873635   PMID:26186194   PMID:28514442   PMID:32296183   PMID:33961781  


Genomics

Comparative Map Data
PLPPR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,355,432 - 11,365,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,355,386 - 11,365,698 (+)EnsemblGRCh38hg38GRCh38
GRCh371911,466,108 - 11,476,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,327,109 - 11,337,372 (+)NCBINCBI36Build 36hg18NCBI36
Celera1911,360,936 - 11,371,242 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,042,113 - 11,052,420 (+)NCBIHuRef
CHM1_11911,467,084 - 11,477,386 (+)NCBICHM1_1
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBIT2T-CHM13v2.0
Plppr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,848,306 - 21,860,203 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,848,329 - 21,860,203 (+)EnsemblGRCm39 Ensembl
GRCm38921,935,684 - 21,948,907 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,937,033 - 21,948,907 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,742,718 - 21,753,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,688,676 - 21,699,309 (+)NCBIMGSCv36mm8
Celera919,207,511 - 19,218,335 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.92NCBI
Plppr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,742,787 - 28,755,555 (+)NCBIGRCr8
mRatBN7.2820,467,071 - 20,479,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,467,071 - 20,479,474 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,497,880 - 24,510,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,793,436 - 22,806,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,696,681 - 20,709,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,946,787 - 22,959,554 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,947,152 - 22,959,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,001,604 - 23,014,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,040,658 - 21,050,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera821,858,304 - 21,870,682 (+)NCBICelera
Cytogenetic Map8q13NCBI
Plppr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,269,769 - 2,279,910 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,270,323 - 2,279,688 (+)NCBIChiLan1.0ChiLan1.0
PLPPR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,268,971 - 16,279,745 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,269,566 - 15,278,743 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,902,739 - 10,913,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,614,293 - 11,624,017 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,614,294 - 11,624,017 (+)Ensemblpanpan1.1panPan2
PLPPR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,955,538 - 49,964,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,955,566 - 49,964,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,829,066 - 49,837,707 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,476,257 - 50,484,918 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,476,259 - 50,491,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,686,478 - 49,695,212 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,112,923 - 50,121,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,355,872 - 50,364,535 (-)NCBIUU_Cfam_GSD_1.0
Plppr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,895,903 - 208,904,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,450,338 - 1,459,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,450,314 - 1,458,800 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPPR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,047,788 - 70,055,778 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,047,637 - 70,061,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,410,308 - 70,418,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLPPR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,289,234 - 10,300,511 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,289,695 - 10,300,920 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660749,593,413 - 9,604,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plppr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,158,726 - 3,168,030 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,159,313 - 3,168,030 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLPPR2
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain See cases [RCV000133888] Chr19:11227942..44626354 [GRCh38]
Chr19:11338618..45129651 [GRCh37]
Chr19:11199618..49821491 [NCBI36]
Chr19:19p13.2-q13.31
pathogenic
GRCh38/hg38 19p13.2-13.13(chr19:10319474-13777860)x1 copy number loss See cases [RCV000141568] Chr19:10319474..13777860 [GRCh38]
Chr19:10430150..13888674 [GRCh37]
Chr19:10291150..13749674 [NCBI36]
Chr19:19p13.2-13.13
pathogenic
GRCh38/hg38 19p13.2-13.13(chr19:8831147-13331227)x3 copy number gain See cases [RCV000052908] Chr19:8831147..13331227 [GRCh38]
Chr19:8941823..13442041 [GRCh37]
Chr19:8802823..13303041 [NCBI36]
Chr19:19p13.2-13.13
likely pathogenic
GRCh38/hg38 19p13.2-13.12(chr19:10315258-14048994)x3 copy number gain See cases [RCV000052909] Chr19:10315258..14048994 [GRCh38]
Chr19:10425934..14159806 [GRCh37]
Chr19:10286934..14020806 [NCBI36]
Chr19:19p13.2-13.12
pathogenic
GRCh38/hg38 19p13.2-13.12(chr19:11227942-14532135)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053944]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053944]|See cases [RCV000053944] Chr19:11227942..14532135 [GRCh38]
Chr19:11338618..14642947 [GRCh37]
Chr19:11199618..14503947 [NCBI36]
Chr19:19p13.2-13.12
pathogenic
GRCh38/hg38 19p13.2(chr19:11138895-11549951)x3 copy number gain See cases [RCV000054109] Chr19:11138895..11549951 [GRCh38]
Chr19:11249571..11660766 [GRCh37]
Chr19:11110571..11521766 [NCBI36]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1105C>T (p.Arg369Cys) single nucleotide variant not specified [RCV004295966] Chr19:11364436 [GRCh38]
Chr19:11475112 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1301C>G (p.Pro434Arg) single nucleotide variant not specified [RCV004141958] Chr19:11364632 [GRCh38]
Chr19:11475308 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1091C>T (p.Ser364Leu) single nucleotide variant not specified [RCV004237472] Chr19:11364422 [GRCh38]
Chr19:11475098 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1243C>G (p.Leu415Val) single nucleotide variant not specified [RCV004115864] Chr19:11364574 [GRCh38]
Chr19:11475250 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.706G>A (p.Val236Ile) single nucleotide variant not specified [RCV004228612] Chr19:11362555 [GRCh38]
Chr19:11473231 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1166C>T (p.Thr389Ile) single nucleotide variant not specified [RCV004186613] Chr19:11364497 [GRCh38]
Chr19:11475173 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.527C>T (p.Pro176Leu) single nucleotide variant not specified [RCV004229888] Chr19:11361352 [GRCh38]
Chr19:11472028 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.887G>A (p.Arg296Gln) single nucleotide variant not specified [RCV004087164] Chr19:11363759 [GRCh38]
Chr19:11474435 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1186C>A (p.Pro396Thr) single nucleotide variant not specified [RCV004158917] Chr19:11364517 [GRCh38]
Chr19:11475193 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.959C>A (p.Ala320Glu) single nucleotide variant not specified [RCV004213409] Chr19:11363831 [GRCh38]
Chr19:11474507 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.430G>A (p.Ala144Thr) single nucleotide variant not specified [RCV004100056] Chr19:11361255 [GRCh38]
Chr19:11471931 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.278G>A (p.Arg93His) single nucleotide variant not specified [RCV004260717] Chr19:11359843 [GRCh38]
Chr19:11470519 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1099G>A (p.Val367Met) single nucleotide variant not specified [RCV004271482] Chr19:11364430 [GRCh38]
Chr19:11475106 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.167A>T (p.Tyr56Phe) single nucleotide variant not specified [RCV004263862] Chr19:11359632 [GRCh38]
Chr19:11470308 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.313G>A (p.Val105Ile) single nucleotide variant not specified [RCV004256613] Chr19:11359878 [GRCh38]
Chr19:11470554 [GRCh37]
Chr19:19p13.2
likely benign
NM_001393892.1(PLPPR2):c.703C>T (p.Leu235=) single nucleotide variant not provided [RCV003421837] Chr19:11362552 [GRCh38]
Chr19:11473228 [GRCh37]
Chr19:19p13.2
likely benign
NM_001393892.1(PLPPR2):c.1033C>T (p.Arg345Cys) single nucleotide variant not specified [RCV004506743] Chr19:11364364 [GRCh38]
Chr19:11475040 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.994C>T (p.Pro332Ser) single nucleotide variant not specified [RCV004506742] Chr19:11364191 [GRCh38]
Chr19:11474867 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.299C>T (p.Pro100Leu) single nucleotide variant not specified [RCV004506741] Chr19:11359864 [GRCh38]
Chr19:11470540 [GRCh37]
Chr19:19p13.2
uncertain significance
NM_001393892.1(PLPPR2):c.1088C>T (p.Ser363Leu) single nucleotide variant not specified [RCV004506740] Chr19:11364419 [GRCh38]
Chr19:11475095 [GRCh37]
Chr19:19p13.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3640
Count of miRNA genes:905
Interacting mature miRNAs:1143
Transcripts:ENST00000251473, ENST00000586380, ENST00000586431, ENST00000587801, ENST00000588196, ENST00000588360, ENST00000591329, ENST00000591608
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH103379  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371911,476,006 - 11,476,149UniSTSGRCh37
Build 361911,337,006 - 11,337,149RGDNCBI36
Celera1911,370,874 - 11,371,017RGD
Cytogenetic Map19p13.2UniSTS
HuRef1911,052,052 - 11,052,195UniSTS
GeneMap99-GB4 RH Map1971.07UniSTS
STS-N51328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371911,476,154 - 11,476,318UniSTSGRCh37
Build 361911,337,154 - 11,337,318RGDNCBI36
Celera1911,371,022 - 11,371,186RGD
Cytogenetic Map19p13.2UniSTS
HuRef1911,052,200 - 11,052,364UniSTS
GeneMap99-GB4 RH Map1968.33UniSTS
NCBI RH Map1987.9UniSTS
LPPR2__6417  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371911,475,482 - 11,476,376UniSTSGRCh37
Build 361911,336,482 - 11,337,376RGDNCBI36
Celera1911,370,350 - 11,371,244RGD
HuRef1911,051,528 - 11,052,422UniSTS
RH98197  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19p13.2UniSTS
HuRef1911,040,352 - 11,040,515UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2235 2732 1584 489 1290 329 4263 1936 3687 307 1422 1572 170 1203 2755 1
Low 196 248 139 133 630 135 92 257 21 110 26 36 1 33 3
Below cutoff 1 4 24 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005260017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC024575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL353953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY304516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY339628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS300733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB169285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF548053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000251473   ⟹   ENSP00000251473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,386 - 11,365,698 (+)Ensembl
RefSeq Acc Id: ENST00000586380   ⟹   ENSP00000466698
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,466 - 11,359,838 (+)Ensembl
RefSeq Acc Id: ENST00000586431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,431 - 11,359,708 (+)Ensembl
RefSeq Acc Id: ENST00000587801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,359,723 - 11,363,768 (+)Ensembl
RefSeq Acc Id: ENST00000588196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,357,696 - 11,359,894 (+)Ensembl
RefSeq Acc Id: ENST00000588360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,361,266 - 11,364,215 (+)Ensembl
RefSeq Acc Id: ENST00000591329   ⟹   ENSP00000467807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,424 - 11,359,719 (+)Ensembl
RefSeq Acc Id: ENST00000591608   ⟹   ENSP00000466898
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,498 - 11,365,698 (+)Ensembl
RefSeq Acc Id: ENST00000688289   ⟹   ENSP00000510269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,355,432 - 11,365,698 (+)Ensembl
RefSeq Acc Id: NM_001170635   ⟹   NP_001164106
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
GRCh371911,466,062 - 11,476,374 (+)RGD
GRCh371911,466,062 - 11,476,374 (+)NCBI
Celera1911,360,936 - 11,371,242 (+)RGD
HuRef1911,042,113 - 11,052,420 (+)ENTREZGENE
CHM1_11911,467,084 - 11,477,386 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393892   ⟹   NP_001380821
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393893   ⟹   NP_001380822
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393894   ⟹   NP_001380823
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393895   ⟹   NP_001380824
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393896   ⟹   NP_001380825
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_022737   ⟹   NP_073574
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
GRCh371911,466,062 - 11,476,374 (+)NCBI
Build 361911,327,109 - 11,337,372 (+)NCBI Archive
Celera1911,360,936 - 11,371,242 (+)RGD
HuRef1911,042,113 - 11,052,420 (+)ENTREZGENE
CHM1_11911,467,084 - 11,477,386 (+)NCBI
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017027148   ⟹   XP_016882637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,365,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054321778   ⟹   XP_054177753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBI
RefSeq Acc Id: XM_054321779   ⟹   XP_054177754
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01911,484,654 - 11,492,670 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001164106 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380821 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380822 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380823 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380824 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380825 (Get FASTA)   NCBI Sequence Viewer  
  NP_073574 (Get FASTA)   NCBI Sequence Viewer  
  XP_016882637 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177753 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177754 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH09378 (Get FASTA)   NCBI Sequence Viewer  
  AAP72153 (Get FASTA)   NCBI Sequence Viewer  
  AAQ73540 (Get FASTA)   NCBI Sequence Viewer  
  BAB14414 (Get FASTA)   NCBI Sequence Viewer  
  BAC04443 (Get FASTA)   NCBI Sequence Viewer  
  CAH10684 (Get FASTA)   NCBI Sequence Viewer  
  CAI56790 (Get FASTA)   NCBI Sequence Viewer  
  CAK32397 (Get FASTA)   NCBI Sequence Viewer  
  CCO13764 (Get FASTA)   NCBI Sequence Viewer  
  EAW84200 (Get FASTA)   NCBI Sequence Viewer  
  EAW84201 (Get FASTA)   NCBI Sequence Viewer  
  EAW84202 (Get FASTA)   NCBI Sequence Viewer  
  EAW84203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000251473
  ENSP00000251473.4
  ENSP00000466698.1
  ENSP00000466898
  ENSP00000466898.1
  ENSP00000467807.1
  ENSP00000510269
  ENSP00000510269.1
GenBank Protein Q96GM1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073574   ⟸   NM_022737
- Peptide Label: isoform 1
- UniProtKB: Q8N1U4 (UniProtKB/Swiss-Prot),   Q5CZ76 (UniProtKB/Swiss-Prot),   Q9H929 (UniProtKB/Swiss-Prot),   Q96GM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164106   ⟸   NM_001170635
- Peptide Label: isoform 2
- UniProtKB: Q96GM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016882637   ⟸   XM_017027148
- Peptide Label: isoform X1
- UniProtKB: Q96GM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000466698   ⟸   ENST00000586380
RefSeq Acc Id: ENSP00000466898   ⟸   ENST00000591608
RefSeq Acc Id: ENSP00000467807   ⟸   ENST00000591329
RefSeq Acc Id: ENSP00000251473   ⟸   ENST00000251473
RefSeq Acc Id: NP_001380822   ⟸   NM_001393893
- Peptide Label: isoform 3
- UniProtKB: A0A8I5KWF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380823   ⟸   NM_001393894
- Peptide Label: isoform 1
- UniProtKB: Q96GM1 (UniProtKB/Swiss-Prot),   Q8N1U4 (UniProtKB/Swiss-Prot),   Q5CZ76 (UniProtKB/Swiss-Prot),   Q9H929 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380825   ⟸   NM_001393896
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001380821   ⟸   NM_001393892
- Peptide Label: isoform 3
- UniProtKB: A0A8I5KWF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380824   ⟸   NM_001393895
- Peptide Label: isoform 4
RefSeq Acc Id: ENSP00000510269   ⟸   ENST00000688289
RefSeq Acc Id: XP_054177753   ⟸   XM_054321778
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054177754   ⟸   XM_054321779
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96GM1-F1-model_v2 AlphaFold Q96GM1 1-343 view protein structure

Promoters
RGD ID:6795765
Promoter ID:HG_KWN:28910
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001170635,   NM_022737
Position:
Human AssemblyChrPosition (strand)Source
Build 361911,326,886 - 11,327,386 (+)MPROMDB
RGD ID:7238587
Promoter ID:EPDNEW_H25040
Type:initiation region
Name:PLPPR2_1
Description:phospholipid phosphatase related 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,355,432 - 11,355,492EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29566 AgrOrtholog
COSMIC PLPPR2 COSMIC
Ensembl Genes ENSG00000105520 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000251473 ENTREZGENE
  ENST00000251473.9 UniProtKB/Swiss-Prot
  ENST00000586380.5 UniProtKB/TrEMBL
  ENST00000591329.5 UniProtKB/TrEMBL
  ENST00000591608 ENTREZGENE
  ENST00000591608.2 UniProtKB/Swiss-Prot
  ENST00000688289 ENTREZGENE
  ENST00000688289.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000105520 GTEx
HGNC ID HGNC:29566 ENTREZGENE
Human Proteome Map PLPPR2 Human Proteome Map
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_Acid_Pase_2/haloperoxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLPP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:64748 UniProtKB/Swiss-Prot
NCBI Gene 64748 ENTREZGENE
OMIM 619591 OMIM
PANTHER PTHR10165 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10165:SF15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA166181596 PharmGKB
SMART acidPPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48317 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5KWF3 ENTREZGENE, UniProtKB/TrEMBL
  K7EMX8_HUMAN UniProtKB/TrEMBL
  K7EQF7_HUMAN UniProtKB/TrEMBL
  PLPR2_HUMAN UniProtKB/Swiss-Prot
  Q5CZ76 ENTREZGENE
  Q8N1U4 ENTREZGENE
  Q96GM1 ENTREZGENE
  Q9H929 ENTREZGENE
UniProt Secondary Q5CZ76 UniProtKB/Swiss-Prot
  Q8N1U4 UniProtKB/Swiss-Prot
  Q9H929 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-20 PLPPR2  phospholipid phosphatase related 2  LPPR2  lipid phosphate phosphatase-related protein type 2  Symbol and/or name change 5135510 APPROVED