SMIM43 (small integral membrane protein 43) - Rat Genome Database

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Gene: SMIM43 (small integral membrane protein 43) Homo sapiens
Analyze
Symbol: SMIM43
Name: small integral membrane protein 43
RGD ID: 1604239
HGNC Page HGNC:55077
Description: Enables transmembrane transporter binding activity. Predicted to be involved in mesendoderm development. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ30834; NEMEP; Nodal Enhanced MEsendoderm Peptide; TMEM155; transmembrane protein 155
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,758,930 - 121,765,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,758,881 - 121,765,427 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,680,085 - 122,686,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,899,535 - 122,905,790 (-)NCBINCBI36Build 36hg18NCBI36
Celera4120,065,643 - 120,071,897 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,407,064 - 118,413,318 (-)NCBIHuRef
CHM1_14122,656,543 - 122,662,799 (-)NCBICHM1_1
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IEA,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15489334   PMID:15815621   PMID:16344560   PMID:26186194   PMID:28514442   PMID:35810171  


Genomics

Comparative Map Data
SMIM43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,758,930 - 121,765,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,758,881 - 121,765,427 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,680,085 - 122,686,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,899,535 - 122,905,790 (-)NCBINCBI36Build 36hg18NCBI36
Celera4120,065,643 - 120,071,897 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,407,064 - 118,413,318 (-)NCBIHuRef
CHM1_14122,656,543 - 122,662,799 (-)NCBICHM1_1
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBIT2T-CHM13v2.0
Smim43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,569,776 - 36,582,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,569,206 - 36,586,533 (-)EnsemblGRCm39 Ensembl
GRCm38336,515,627 - 36,521,412 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,515,057 - 36,532,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,413,979 - 36,420,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera336,399,100 - 36,404,776 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.48NCBI
Smim43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82121,304,262 - 121,314,779 (-)NCBIGRCr8
mRatBN7.22119,380,454 - 119,385,966 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2119,385,754 - 119,385,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2125,935,145 - 125,940,647 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,047,644 - 124,053,146 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,676,632 - 118,682,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,227,621 - 123,235,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera2114,336,870 - 114,344,413 (-)NCBICelera
Cytogenetic Map2q25NCBI
Smim43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542818,789,746 - 18,797,027 (+)NCBIChiLan1.0ChiLan1.0
SMIM43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23119,561,052 - 119,561,243 (-)NCBINHGRI_mPanPan1-v2
SMIM43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,368,083 - 18,374,817 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,368,064 - 18,368,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,584,840 - 18,591,382 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01918,455,006 - 18,492,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1918,486,394 - 18,492,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11918,437,406 - 18,443,959 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01918,719,080 - 18,725,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01919,195,023 - 19,201,775 (+)NCBIUU_Cfam_GSD_1.0
Smim43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,097,898 - 66,103,528 (+)NCBIHiC_Itri_2
SMIM43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,322,737 - 102,330,032 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,327,330 - 102,330,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMIM43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,034,264 - 69,039,166 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603747,994,004 - 48,000,343 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,032,549 - 2,035,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SMIM43
3 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q27(chr4:121636147-122327601)x3 copy number gain See cases [RCV000051634] Chr4:121636147..122327601 [GRCh38]
Chr4:122557302..123248756 [GRCh37]
Chr4:122776752..123468206 [NCBI36]
Chr4:4q27		 uncertain significance
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2		 pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2		 pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3		 pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3		 pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21		 pathogenic
GRCh38/hg38 4q27(chr4:121164018-122098913)x1 copy number loss See cases [RCV000137335] Chr4:121164018..122098913 [GRCh38]
Chr4:122085173..123020068 [GRCh37]
Chr4:122304623..123239518 [NCBI36]
Chr4:4q27		 uncertain significance
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1 copy number loss See cases [RCV000143207] Chr4:117351881..133565667 [GRCh38]
Chr4:118273037..134486822 [GRCh37]
Chr4:118492485..134706272 [NCBI36]
Chr4:4q26-28.3		 pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3 copy number gain See cases [RCV000240392] Chr4:119437495..190904301 [GRCh37]
Chr4:4q26-35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q27(chr4:122577041-122794813)x3 copy number gain See cases [RCV000445785] Chr4:122577041..122794813 [GRCh37]
Chr4:4q27		 uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3 copy number gain See cases [RCV000511945] Chr4:109199664..189752726 [GRCh37]
Chr4:4q25-35.2		 pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q26-28.2(chr4:116307857-129302960)x1 copy number loss not provided [RCV000682448] Chr4:116307857..129302960 [GRCh37]
Chr4:4q26-28.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q27(chr4:122547684-123268279)x3 copy number gain not provided [RCV000849513] Chr4:122547684..123268279 [GRCh37]
Chr4:4q27		 uncertain significance
Single allele deletion Neurodevelopmental disorder [RCV000787448] Chr4:116624547..126168646 [GRCh37]
Chr4:4q26-28.1		 likely pathogenic
GRCh37/hg19 4q26-28.2(chr4:116833638-130232122) copy number loss Atypical behavior [RCV001352657] Chr4:116833638..130232122 [GRCh37]
Chr4:4q26-28.2		 pathogenic
GRCh37/hg19 4q26-28.3(chr4:114872547-138005267)x1 copy number loss not provided [RCV001795851] Chr4:114872547..138005267 [GRCh37]
Chr4:4q26-28.3		 pathogenic
GRCh37/hg19 4q26-28.2(chr4:116888785-129649979) copy number loss not specified [RCV002053451] Chr4:116888785..129649979 [GRCh37]
Chr4:4q26-28.2		 pathogenic
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21		 pathogenic
GRCh37/hg19 4q24-31.21(chr4:104715235-145252595) copy number gain not specified [RCV002053446] Chr4:104715235..145252595 [GRCh37]
Chr4:4q24-31.21		 pathogenic
GRCh37/hg19 4q27(chr4:122577041-122794813) copy number gain not specified [RCV002053453] Chr4:122577041..122794813 [GRCh37]
Chr4:4q27		 uncertain significance
NC_000004.11:g.(?_121616266)_(124323706_?)dup duplication Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome [RCV003113657] Chr4:121616266..124323706 [GRCh37]
Chr4:4q27-28.1		 uncertain significance
NM_001384332.1(SMIM43):c.*362A>T single nucleotide variant not specified [RCV004248478] Chr4:121761675 [GRCh38]
Chr4:122682830 [GRCh37]
Chr4:4q27		 uncertain significance
NM_001384332.1(SMIM43):c.*442T>C single nucleotide variant not specified [RCV004343018] Chr4:121761595 [GRCh38]
Chr4:122682750 [GRCh37]
Chr4:4q27		 uncertain significance
GRCh37/hg19 4q26-32.3(chr4:117518683-168174703)x3 copy number gain not provided [RCV003484198] Chr4:117518683..168174703 [GRCh37]
Chr4:4q26-32.3		 pathogenic
GRCh37/hg19 4q27(chr4:122547685-123261107)x3 copy number gain not provided [RCV003484201] Chr4:122547685..123261107 [GRCh37]
Chr4:4q27		 uncertain significance
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3 copy number gain not specified [RCV003986496] Chr4:101203509..190957473 [GRCh37]
Chr4:4q24-35.2		 pathogenic
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2		 pathogenic
NM_001384332.1(SMIM43):c.*409C>G single nucleotide variant not specified [RCV004461974] Chr4:121761628 [GRCh38]
Chr4:122682783 [GRCh37]
Chr4:4q27		 uncertain significance
NM_001384332.1(SMIM43):c.*330A>C single nucleotide variant not specified [RCV004461975] Chr4:121761841 [GRCh38]
Chr4:122682996 [GRCh37]
Chr4:4q27		 uncertain significance
NM_001384332.1(SMIM43):c.*294T>G single nucleotide variant not specified [RCV004461976] Chr4:121761877 [GRCh38]
Chr4:122683032 [GRCh37]
Chr4:4q27		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1643
Count of miRNA genes:575
Interacting mature miRNAs:615
Transcripts:ENST00000337677, ENST00000394394, ENST00000394396, ENST00000461198, ENST00000505198, ENST00000506551, ENST00000513254, ENST00000514885
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
Cda1kd08  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374122,680,238 - 122,680,363UniSTSGRCh37
Build 364122,899,688 - 122,899,813RGDNCBI36
Celera4120,065,796 - 120,065,921RGD
Cytogenetic Map4q27UniSTS
HuRef4118,407,217 - 118,407,342UniSTS
GeneMap99-GB4 RH Map4558.38UniSTS
SHGC-50333  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374122,680,118 - 122,680,307UniSTSGRCh37
Build 364122,899,568 - 122,899,757RGDNCBI36
Celera4120,065,676 - 120,065,865RGD
Cytogenetic Map4q27UniSTS
HuRef4118,407,097 - 118,407,286UniSTS
TNG Radiation Hybrid Map476294.0UniSTS
SHGC-19128  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374122,680,171 - 122,680,307UniSTSGRCh37
Build 364122,899,621 - 122,899,757RGDNCBI36
Celera4120,065,729 - 120,065,865RGD
Cytogenetic Map4q27UniSTS
HuRef4118,407,150 - 118,407,286UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 18 9 3 1 23 1 204 829 5 7 5 1 201 1
Low 1520 290 83 20 290 17 784 775 1079 87 563 203 4 1 326 436 3 1
Below cutoff 735 1942 1089 325 730 194 1894 757 1297 148 676 1139 135 760 1066

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001384332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL552582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI757990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX359599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA176165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB116307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY117228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000394394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,759,364 - 121,765,427 (-)Ensembl
RefSeq Acc Id: ENST00000394396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,758,933 - 121,764,294 (-)Ensembl
RefSeq Acc Id: ENST00000461198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,758,933 - 121,765,127 (-)Ensembl
RefSeq Acc Id: ENST00000505198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,761,556 - 121,764,760 (-)Ensembl
RefSeq Acc Id: ENST00000506551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,762,622 - 121,764,307 (-)Ensembl
RefSeq Acc Id: ENST00000513254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,760,249 - 121,765,427 (-)Ensembl
RefSeq Acc Id: ENST00000514885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,761,538 - 121,765,361 (-)Ensembl
RefSeq Acc Id: ENST00000643663   ⟹   ENSP00000495936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,758,881 - 121,765,170 (-)Ensembl
RefSeq Acc Id: ENST00000643802   ⟹   ENSP00000495721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4121,758,930 - 121,765,164 (-)Ensembl
RefSeq Acc Id: NM_001384332   ⟹   NP_001371261
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,164 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,191 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384333   ⟹   NP_001371262
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,164 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,191 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384334   ⟹   NP_001371263
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,164 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,191 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169194
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,400 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169195
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,400 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169196
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,758,930 - 121,765,400 (-)NCBI
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054348897   ⟹   XP_054204872
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04125,065,619 - 125,069,191 (-)NCBI
RefSeq Acc Id: XM_054348898   ⟹   XP_054204873
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04125,065,565 - 125,069,132 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSP00000495936   ⟸   ENST00000643663
RefSeq Acc Id: ENSP00000495721   ⟸   ENST00000643802
RefSeq Acc Id: NP_001371262   ⟸   NM_001384333
- UniProtKB: Q4W5P6 (UniProtKB/Swiss-Prot),   D3DNW9 (UniProtKB/Swiss-Prot),   A0A2R8YEN4 (UniProtKB/Swiss-Prot),   Q96NI2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001371261   ⟸   NM_001384332
- UniProtKB: Q4W5P6 (UniProtKB/Swiss-Prot),   D3DNW9 (UniProtKB/Swiss-Prot),   A0A2R8YEN4 (UniProtKB/Swiss-Prot),   Q96NI2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001371263   ⟸   NM_001384334
- UniProtKB: Q4W5P6 (UniProtKB/Swiss-Prot),   D3DNW9 (UniProtKB/Swiss-Prot),   A0A2R8YEN4 (UniProtKB/Swiss-Prot),   Q96NI2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054204873   ⟸   XM_054348898
- Peptide Label: isoform X1
- UniProtKB: Q96NI2 (UniProtKB/Swiss-Prot),   Q4W5P6 (UniProtKB/Swiss-Prot),   D3DNW9 (UniProtKB/Swiss-Prot),   A0A2R8YEN4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054204872   ⟸   XM_054348897
- Peptide Label: isoform X1
- UniProtKB: Q96NI2 (UniProtKB/Swiss-Prot),   Q4W5P6 (UniProtKB/Swiss-Prot),   D3DNW9 (UniProtKB/Swiss-Prot),   A0A2R8YEN4 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4W5P6-F1-model_v2 AlphaFold Q4W5P6 1-63 view protein structure
AF-A0A7E1QX52-F1-model_v2 AlphaFold A0A7E1QX52 1-130 view protein structure

Promoters
RGD ID:6868398
Promoter ID:EPDNEW_H7364
Type:initiation region
Name:TMEM155_3
Description:transmembrane protein 155
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7365  EPDNEW_H7366  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,764,849 - 121,764,909EPDNEW
RGD ID:6868400
Promoter ID:EPDNEW_H7365
Type:initiation region
Name:TMEM155_2
Description:transmembrane protein 155
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7364  EPDNEW_H7366  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,765,157 - 121,765,217EPDNEW
RGD ID:6868402
Promoter ID:EPDNEW_H7366
Type:initiation region
Name:TMEM155_1
Description:transmembrane protein 155
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7364  EPDNEW_H7365  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384121,765,275 - 121,765,335EPDNEW

Additional Information

Database Acc Id Source(s)
COSMIC SMIM43 COSMIC
Ensembl Genes ENSG00000164112 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000394396 ENTREZGENE
  ENST00000461198 ENTREZGENE
  ENST00000643663 UniProtKB/TrEMBL
  ENST00000643663.2 UniProtKB/Swiss-Prot
  ENST00000643802 ENTREZGENE
  ENST00000643802.2 UniProtKB/Swiss-Prot
GTEx ENSG00000164112 GTEx
HGNC ID HGNC:55077 ENTREZGENE
Human Proteome Map SMIM43 Human Proteome Map
NCBI Gene 132332 ENTREZGENE
UniProt A0A2R8YEN4 ENTREZGENE
  A0A7E1QX52_HUMAN UniProtKB/TrEMBL
  D3DNW9 ENTREZGENE
  Q4W5P6 ENTREZGENE
  Q96NI2 ENTREZGENE
  TM155_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A0A2R8YEN4 UniProtKB/Swiss-Prot
  D3DNW9 UniProtKB/Swiss-Prot
  Q96NI2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-22 SMIM43  small integral membrane protein 43  TMEM155  transmembrane protein 155  Symbol and/or name change 19259463 PROVISIONAL