TMEM201 (transmembrane protein 201) - Rat Genome Database

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Gene: TMEM201 (transmembrane protein 201) Homo sapiens
Analyze
Symbol: TMEM201
Name: transmembrane protein 201
RGD ID: 1604210
HGNC Page HGNC:33719
Description: Predicted to enable actin filament binding activity and lamin binding activity. Involved in centrosome localization; nuclear envelope organization; and protein localization to nuclear envelope. Located in cortical endoplasmic reticulum; nuclear inner membrane; and spindle pole centrosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ima1; NET5; RP13-15M17.2; SAMP1; spindle associated membrane protein 1; spindle-associated membrane protein 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,588,911 - 9,614,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,588,911 - 9,614,877 (+)EnsemblGRCh38hg38GRCh38
GRCh3719,648,969 - 9,674,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,571,567 - 9,587,594 (+)NCBINCBI36Build 36hg18NCBI36
Celera18,762,143 - 8,781,135 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,799,790 - 8,825,673 (+)NCBIHuRef
CHM1_119,637,484 - 9,663,494 (+)NCBICHM1_1
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16344560   PMID:19494128   PMID:21327071   PMID:21873635   PMID:22119785   PMID:22268729   PMID:22412018   PMID:24623722   PMID:24927568   PMID:24950247   PMID:26186194  
PMID:26496610   PMID:26972000   PMID:28190767   PMID:28514442   PMID:28668644   PMID:28692057   PMID:28718761   PMID:29180619   PMID:29395067   PMID:29467282   PMID:29509190   PMID:29510091  
PMID:29514856   PMID:29540532   PMID:29844126   PMID:30793190   PMID:30804502   PMID:30948266   PMID:31056421   PMID:31073040   PMID:31091453   PMID:31180492   PMID:31871319   PMID:32296183  
PMID:32344865   PMID:32614325   PMID:32707033   PMID:33306668   PMID:33742100   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34432599   PMID:34702444   PMID:35271311   PMID:35311970  
PMID:35384245   PMID:35563538   PMID:35696571   PMID:35944360   PMID:36114006   PMID:36180527   PMID:37373430   PMID:37774976   PMID:37827155  


Genomics

Comparative Map Data
TMEM201
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,588,911 - 9,614,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,588,911 - 9,614,877 (+)EnsemblGRCh38hg38GRCh38
GRCh3719,648,969 - 9,674,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,571,567 - 9,587,594 (+)NCBINCBI36Build 36hg18NCBI36
Celera18,762,143 - 8,781,135 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,799,790 - 8,825,673 (+)NCBIHuRef
CHM1_119,637,484 - 9,663,494 (+)NCBICHM1_1
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBIT2T-CHM13v2.0
Tmem201
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,799,832 - 149,822,501 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,799,832 - 149,822,501 (-)EnsemblGRCm39 Ensembl
GRCm384149,715,375 - 149,738,072 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,715,375 - 149,738,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv374149,089,493 - 149,112,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,559,184 - 148,581,836 (-)NCBIMGSCv36mm8
Celera4151,981,567 - 152,004,232 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map480.15NCBI
Tmem201
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,449,270 - 165,471,901 (-)NCBIGRCr8
mRatBN7.25160,166,240 - 160,188,874 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,166,427 - 160,188,843 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05166,672,700 - 166,695,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,672,450 - 166,695,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,317,114 - 170,339,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,809,346 - 166,830,271 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5158,435,362 - 158,457,987 (-)NCBICelera
Cytogenetic Map5q36NCBI
Tmem201
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,882,813 - 3,900,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,881,571 - 3,900,879 (-)NCBIChiLan1.0ChiLan1.0
TMEM201
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,612,711 - 218,639,061 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,257,346 - 217,283,703 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,349,271 - 8,375,601 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,583,400 - 9,606,331 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,583,400 - 9,606,331 (+)Ensemblpanpan1.1panPan2
TMEM201
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1562,831,449 - 62,853,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl562,834,884 - 62,851,467 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha562,844,626 - 62,869,026 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,055,557 - 63,079,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,055,372 - 63,077,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,077,401 - 63,101,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0562,916,460 - 62,941,005 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,320,452 - 63,344,878 (+)NCBIUU_Cfam_GSD_1.0
Tmem201
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,122,244 - 33,144,928 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,613,218 - 3,628,688 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,612,845 - 3,629,661 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM201
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl669,973,397 - 69,998,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1669,973,378 - 69,998,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,119,037 - 64,144,221 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM201
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120122,155,430 - 122,181,624 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20122,157,166 - 122,181,446 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605426,121,719 - 26,147,883 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem201
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,816,845 - 2,835,524 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,817,083 - 2,835,468 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM201
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.31-36.21(chr1:6652339-12724844)x3 copy number gain See cases [RCV000051794] Chr1:6652339..12724844 [GRCh38]
Chr1:6712399..12784811 [GRCh37]
Chr1:6634986..12707398 [NCBI36]
Chr1:1p36.31-36.21		 pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:6853513-17326813)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|See cases [RCV000051795] Chr1:6853513..17326813 [GRCh38]
Chr1:6913573..17685411 [GRCh37]
Chr1:6836160..17557998 [NCBI36]
Chr1:1p36.31-36.13		 pathogenic
GRCh38/hg38 1p36.33-36.22(chr1:844347-10809098)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052038]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052038]|See cases [RCV000052038] Chr1:844347..10809098 [GRCh38]
Chr1:779727..10869155 [GRCh37]
Chr1:769590..10791742 [NCBI36]
Chr1:1p36.33-36.22		 pathogenic
GRCh38/hg38 1p36.31-36.22(chr1:5682528-10863843)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053730]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053730]|See cases [RCV000053730] Chr1:5682528..10863843 [GRCh38]
Chr1:5742588..10923900 [GRCh37]
Chr1:5665175..10846487 [NCBI36]
Chr1:1p36.31-36.22		 pathogenic
GRCh38/hg38 1p36.32-36.21(chr1:2963330-12666744)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053713]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053713]|See cases [RCV000053713] Chr1:2963330..12666744 [GRCh38]
Chr1:2879895..12726755 [GRCh37]
Chr1:2869755..12649342 [NCBI36]
Chr1:1p36.32-36.21		 pathogenic
GRCh38/hg38 1p36.32-36.13(chr1:3006193-17688934)x1 copy number loss See cases [RCV000053714] Chr1:3006193..17688934 [GRCh38]
Chr1:2922757..18015429 [GRCh37]
Chr1:2912617..17888016 [NCBI36]
Chr1:1p36.32-36.13		 pathogenic
GRCh38/hg38 1p36.32-36.22(chr1:3319336-11243395)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053716]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053716]|See cases [RCV000053716] Chr1:3319336..11243395 [GRCh38]
Chr1:3235900..11303452 [GRCh37]
Chr1:3225760..11226039 [NCBI36]
Chr1:1p36.32-36.22		 pathogenic
GRCh38/hg38 1p36.32-36.21(chr1:4898439-13111056)x1 copy number loss See cases [RCV000053724] Chr1:4898439..13111056 [GRCh38]
Chr1:4958499..13178528 [GRCh37]
Chr1:4858359..13101115 [NCBI36]
Chr1:1p36.32-36.21		 pathogenic
GRCh38/hg38 1p36.23-36.21(chr1:7165036-13111056)x1 copy number loss See cases [RCV000053755] Chr1:7165036..13111056 [GRCh38]
Chr1:7225096..13178528 [GRCh37]
Chr1:7147683..13101115 [NCBI36]
Chr1:1p36.23-36.21		 pathogenic
GRCh38/hg38 1p36.23-36.13(chr1:9034671-16441465)x1 copy number loss See cases [RCV000053756] Chr1:9034671..16441465 [GRCh38]
Chr1:9094730..16767960 [GRCh37]
Chr1:9017317..16640547 [NCBI36]
Chr1:1p36.23-36.13		 pathogenic
GRCh38/hg38 1p36.22-36.21(chr1:9406722-12852772)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053757]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053757]|See cases [RCV000053757] Chr1:9406722..12852772 [GRCh38]
Chr1:9466781..12912625 [GRCh37]
Chr1:9389368..12835212 [NCBI36]
Chr1:1p36.22-36.21		 pathogenic
GRCh38/hg38 1p36.23-36.21(chr1:9064492-12666744)x1 copy number loss See cases [RCV000133779] Chr1:9064492..12666744 [GRCh38]
Chr1:9124551..12726755 [GRCh37]
Chr1:9047138..12649342 [NCBI36]
Chr1:1p36.23-36.21		 pathogenic
GRCh38/hg38 1p36.23-36.22(chr1:8283694-12470133)x1 copy number loss See cases [RCV000135807] Chr1:8283694..12470133 [GRCh38]
Chr1:8343754..12530188 [GRCh37]
Chr1:8266341..12452775 [NCBI36]
Chr1:1p36.23-36.22		 pathogenic
GRCh38/hg38 1p36.23-36.22(chr1:8804244-10102950)x3 copy number gain See cases [RCV000137134] Chr1:8804244..10102950 [GRCh38]
Chr1:8864303..10163008 [GRCh37]
Chr1:8786890..10085595 [NCBI36]
Chr1:1p36.23-36.22		 uncertain significance
GRCh38/hg38 1p36.33-36.22(chr1:844347-12470133)x1 copy number loss See cases [RCV000136695] Chr1:844347..12470133 [GRCh38]
Chr1:779727..12530188 [GRCh37]
Chr1:769590..12452775 [NCBI36]
Chr1:1p36.33-36.22		 pathogenic|likely pathogenic
GRCh38/hg38 1p36.32-36.21(chr1:4898439-12911913)x1 copy number loss See cases [RCV000137461] Chr1:4898439..12911913 [GRCh38]
Chr1:4958499..12971757 [GRCh37]
Chr1:4858359..12894344 [NCBI36]
Chr1:1p36.32-36.21		 pathogenic
GRCh38/hg38 1p36.31-36.21(chr1:6303641-15799093)x1 copy number loss See cases [RCV000137948] Chr1:6303641..15799093 [GRCh38]
Chr1:6363701..16125588 [GRCh37]
Chr1:6286288..15998175 [NCBI36]
Chr1:1p36.31-36.21		 pathogenic|likely benign
GRCh38/hg38 1p36.22-36.21(chr1:9428538-15815791)x1 copy number loss See cases [RCV000140873] Chr1:9428538..15815791 [GRCh38]
Chr1:9488597..16142286 [GRCh37]
Chr1:9411184..16014873 [NCBI36]
Chr1:1p36.22-36.21		 pathogenic
GRCh38/hg38 1p36.22(chr1:9378480-10317912)x3 copy number gain See cases [RCV000141821] Chr1:9378480..10317912 [GRCh38]
Chr1:9438539..10377970 [GRCh37]
Chr1:9361126..10300557 [NCBI36]
Chr1:1p36.22		 uncertain significance
GRCh38/hg38 1p36.31-36.13(chr1:6554885-16056011)x3 copy number gain See cases [RCV000142906] Chr1:6554885..16056011 [GRCh38]
Chr1:6614945..16382506 [GRCh37]
Chr1:6537532..16255093 [NCBI36]
Chr1:1p36.31-36.13		 pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:5363826-18360302)x1 copy number loss See cases [RCV000142771] Chr1:5363826..18360302 [GRCh38]
Chr1:5423886..18686796 [GRCh37]
Chr1:5323746..18559383 [NCBI36]
Chr1:1p36.31-36.13		 pathogenic
GRCh38/hg38 1p36.23-36.22(chr1:8819278-9634691)x3 copy number gain See cases [RCV000143200] Chr1:8819278..9634691 [GRCh38]
Chr1:8879337..9694749 [GRCh37]
Chr1:8801924..9617336 [NCBI36]
Chr1:1p36.23-36.22		 uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207058] Chr1:909238..24706269 [GRCh37]
Chr1:1p36.33-36.11		 uncertain significance
chr1:909238-16736132 complex variant complex Breast ductal adenocarcinoma [RCV000207094] Chr1:909238..16736132 [GRCh37]
Chr1:1p36.33-36.13		 uncertain significance
GRCh37/hg19 1p36.33-36.22(chr1:82154-12699337)x1 copy number loss See cases [RCV000239416] Chr1:82154..12699337 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
GRCh37/hg19 1p36.23-36.21(chr1:8255222-12785220)x3 copy number gain See cases [RCV000240284] Chr1:8255222..12785220 [GRCh37]
Chr1:1p36.23-36.21		 likely pathogenic
GRCh37/hg19 1p36.33-36.21(chr1:746608-15077159)x1 copy number loss See cases [RCV000240403] Chr1:746608..15077159 [GRCh37]
Chr1:1p36.33-36.21		 pathogenic
GRCh37/hg19 1p36.32-36.22(chr1:2817420-10670878)x1 copy number loss See cases [RCV000449468] Chr1:2817420..10670878 [GRCh37]
Chr1:1p36.32-36.22		 pathogenic
GRCh37/hg19 1p36.33-36.22(chr1:849466-9683808)x1 copy number loss See cases [RCV000446331] Chr1:849466..9683808 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
GRCh37/hg19 1p36.32-36.21(chr1:4558588-13187457)x1 copy number loss See cases [RCV000446359] Chr1:4558588..13187457 [GRCh37]
Chr1:1p36.32-36.21		 pathogenic
GRCh37/hg19 1p36.32-36.12(chr1:2749920-22564787)x1 copy number loss See cases [RCV000446470] Chr1:2749920..22564787 [GRCh37]
Chr1:1p36.32-36.12		 pathogenic
GRCh37/hg19 1p36.23-36.22(chr1:7301946-11143298)x3 copy number gain See cases [RCV000448222] Chr1:7301946..11143298 [GRCh37]
Chr1:1p36.23-36.22		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NM_001130924.3(TMEM201):c.870G>C (p.Trp290Cys) single nucleotide variant not specified [RCV004301153] Chr1:9601368 [GRCh38]
Chr1:9661426 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1709T>C (p.Met570Thr) single nucleotide variant not specified [RCV004309648] Chr1:9610749 [GRCh38]
Chr1:9670807 [GRCh37]
Chr1:1p36.22		 uncertain significance
GRCh37/hg19 1p36.23-36.13(chr1:8850514-16272383)x1 copy number loss See cases [RCV000512226] Chr1:8850514..16272383 [GRCh37]
Chr1:1p36.23-36.13		 likely pathogenic
GRCh37/hg19 1p36.23-36.22(chr1:7391956-9775929)x1 copy number loss not provided [RCV000684546] Chr1:7391956..9775929 [GRCh37]
Chr1:1p36.23-36.22		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NM_001130924.3(TMEM201):c.429+7C>T single nucleotide variant not provided [RCV000898453] Chr1:9597060 [GRCh38]
Chr1:9657118 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.600C>T (p.His200=) single nucleotide variant not provided [RCV000903389] Chr1:9598619 [GRCh38]
Chr1:9658677 [GRCh37]
Chr1:1p36.22		 benign
GRCh37/hg19 1p36.33-36.22(chr1:82154-11784118)x1 copy number loss See cases [RCV000790592] Chr1:82154..11784118 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787413] Chr1:554375..9779842 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
NM_001130924.3(TMEM201):c.1640C>A (p.Pro547His) single nucleotide variant not provided [RCV000967902] Chr1:9610680 [GRCh38]
Chr1:9670738 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.633G>A (p.Pro211=) single nucleotide variant not provided [RCV000955667] Chr1:9601131 [GRCh38]
Chr1:9661189 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.131C>T (p.Thr44Met) single nucleotide variant not provided [RCV000955665] Chr1:9595907 [GRCh38]
Chr1:9655965 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.255G>A (p.Pro85=) single nucleotide variant not provided [RCV000955666] Chr1:9596879 [GRCh38]
Chr1:9656937 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.795C>A (p.Thr265=) single nucleotide variant not provided [RCV000955668] Chr1:9601293 [GRCh38]
Chr1:9661351 [GRCh37]
Chr1:1p36.22		 benign
NM_001130924.3(TMEM201):c.1906C>T (p.Arg636Cys) single nucleotide variant not provided [RCV000955669] Chr1:9612988 [GRCh38]
Chr1:9673046 [GRCh37]
Chr1:1p36.22		 benign
GRCh37/hg19 1p36.23-36.22(chr1:8473813-9852687)x1 copy number loss not provided [RCV002472637] Chr1:8473813..9852687 [GRCh37]
Chr1:1p36.23-36.22		 likely pathogenic
GRCh37/hg19 1p36.33-36.13(chr1:849466-17525065)x1 copy number loss not provided [RCV001832902] Chr1:849466..17525065 [GRCh37]
Chr1:1p36.33-36.13		 pathogenic
GRCh37/hg19 1p36.22(chr1:9616141-9971665) copy number loss not specified [RCV002053613] Chr1:9616141..9971665 [GRCh37]
Chr1:1p36.22		 uncertain significance
NC_000001.10:g.(?_8616514)_(12476900_?)dup duplication Immunodeficiency 14 [RCV001920571] Chr1:8616514..12476900 [GRCh37]
Chr1:1p36.23-36.22		 uncertain significance
NC_000001.10:g.(?_6485016)_(12569078_?)del deletion not provided [RCV001940096] Chr1:6485016..12569078 [GRCh37]
Chr1:1p36.31-36.22		 uncertain significance
NC_000001.10:g.(?_9304994)_(12569078_?)dup duplication Charcot-Marie-Tooth disease type 2 [RCV003119499] Chr1:9304994..12569078 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1178_1179del (p.Ser393fs) microsatellite not provided [RCV002227824] Chr1:9607572..9607573 [GRCh38]
Chr1:9667630..9667631 [GRCh37]
Chr1:1p36.22		 uncertain significance
GRCh37/hg19 1p36.33-36.22(chr1:849466-10258804) copy number loss Chromosome 1p36 deletion syndrome, proximal [RCV002280717] Chr1:849466..10258804 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
NM_001130924.3(TMEM201):c.435G>T (p.Arg145Ser) single nucleotide variant not specified [RCV004312979] Chr1:9598454 [GRCh38]
Chr1:9658512 [GRCh37]
Chr1:1p36.22		 uncertain significance
GRCh37/hg19 1p36.31-36.13(chr1:6758933-19287770)x1 copy number loss not provided [RCV002474779] Chr1:6758933..19287770 [GRCh37]
Chr1:1p36.31-36.13		 pathogenic
GRCh37/hg19 1p36.33-36.22(chr1:849467-12448956)x1 copy number loss not provided [RCV002473951] Chr1:849467..12448956 [GRCh37]
Chr1:1p36.33-36.22		 pathogenic
NM_001130924.3(TMEM201):c.694G>A (p.Ala232Thr) single nucleotide variant not specified [RCV004219990] Chr1:9601192 [GRCh38]
Chr1:9661250 [GRCh37]
Chr1:1p36.22		 likely benign
NM_001130924.3(TMEM201):c.494G>A (p.Arg165Gln) single nucleotide variant not specified [RCV004090190] Chr1:9598513 [GRCh38]
Chr1:9658571 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1571G>A (p.Arg524His) single nucleotide variant not specified [RCV004223755] Chr1:9610611 [GRCh38]
Chr1:9670669 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.421C>T (p.Arg141Cys) single nucleotide variant not specified [RCV004216559] Chr1:9597045 [GRCh38]
Chr1:9657103 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1351C>T (p.Arg451Trp) single nucleotide variant not specified [RCV004246937] Chr1:9607747 [GRCh38]
Chr1:9667805 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1825G>C (p.Asp609His) single nucleotide variant not specified [RCV004131067] Chr1:9611812 [GRCh38]
Chr1:9671870 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1778A>C (p.Lys593Thr) single nucleotide variant not specified [RCV004233313] Chr1:9611765 [GRCh38]
Chr1:9671823 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1748A>G (p.Asp583Gly) single nucleotide variant not specified [RCV004240225] Chr1:9610788 [GRCh38]
Chr1:9670846 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.962G>A (p.Arg321Gln) single nucleotide variant not specified [RCV004089174] Chr1:9602074 [GRCh38]
Chr1:9662132 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1952C>G (p.Ala651Gly) single nucleotide variant not specified [RCV004100245] Chr1:9613034 [GRCh38]
Chr1:9673092 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1534G>A (p.Gly512Ser) single nucleotide variant not specified [RCV004209670] Chr1:9610574 [GRCh38]
Chr1:9670632 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1928G>A (p.Arg643Gln) single nucleotide variant not specified [RCV004143550] Chr1:9613010 [GRCh38]
Chr1:9673068 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.316G>A (p.Asp106Asn) single nucleotide variant not specified [RCV004237391] Chr1:9596940 [GRCh38]
Chr1:9656998 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1528G>T (p.Val510Leu) single nucleotide variant not specified [RCV004203141] Chr1:9610568 [GRCh38]
Chr1:9670626 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1141C>T (p.Arg381Trp) single nucleotide variant not specified [RCV004119436] Chr1:9602253 [GRCh38]
Chr1:9662311 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1315C>T (p.Arg439Trp) single nucleotide variant not specified [RCV004247290] Chr1:9607711 [GRCh38]
Chr1:9667769 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1726C>G (p.Pro576Ala) single nucleotide variant not specified [RCV004234030] Chr1:9610766 [GRCh38]
Chr1:9670824 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1912G>A (p.Gly638Ser) single nucleotide variant not specified [RCV004093607] Chr1:9612994 [GRCh38]
Chr1:9673052 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1880C>T (p.Ser627Leu) single nucleotide variant not specified [RCV004188493] Chr1:9611867 [GRCh38]
Chr1:9671925 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1954G>A (p.Ala652Thr) single nucleotide variant not specified [RCV004243953] Chr1:9613036 [GRCh38]
Chr1:9673094 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1750G>A (p.Val584Met) single nucleotide variant not specified [RCV004171412] Chr1:9610790 [GRCh38]
Chr1:9670848 [GRCh37]
Chr1:1p36.22		 likely benign
NM_001130924.3(TMEM201):c.716A>G (p.His239Arg) single nucleotide variant not specified [RCV004089889] Chr1:9601214 [GRCh38]
Chr1:9661272 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1729C>T (p.Arg577Trp) single nucleotide variant not specified [RCV004169601] Chr1:9610769 [GRCh38]
Chr1:9670827 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.794C>T (p.Thr265Ile) single nucleotide variant not specified [RCV004160891] Chr1:9601292 [GRCh38]
Chr1:9661350 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1715C>T (p.Pro572Leu) single nucleotide variant not specified [RCV004199316] Chr1:9610755 [GRCh38]
Chr1:9670813 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1595G>A (p.Arg532Gln) single nucleotide variant not specified [RCV004173937] Chr1:9610635 [GRCh38]
Chr1:9670693 [GRCh37]
Chr1:1p36.22		 uncertain significance
NC_000001.10:g.4481271_20530242del deletion Chromosome 1p36 deletion syndrome [RCV003159574] Chr1:4481271..20530242 [GRCh37]
Chr1:1p36.32-36.12		 pathogenic
NM_001130924.3(TMEM201):c.1988A>G (p.Gln663Arg) single nucleotide variant not specified [RCV004260325] Chr1:9613070 [GRCh38]
Chr1:9673128 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1157G>A (p.Arg386Gln) single nucleotide variant not specified [RCV004262325] Chr1:9602269 [GRCh38]
Chr1:9662327 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.664T>C (p.Phe222Leu) single nucleotide variant not specified [RCV004296972] Chr1:9601162 [GRCh38]
Chr1:9661220 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.241G>A (p.Asp81Asn) single nucleotide variant not specified [RCV004336452] Chr1:9596865 [GRCh38]
Chr1:9656923 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1714C>T (p.Pro572Ser) single nucleotide variant not specified [RCV004338197] Chr1:9610754 [GRCh38]
Chr1:9670812 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1168C>G (p.Pro390Ala) single nucleotide variant not specified [RCV004343486] Chr1:9607564 [GRCh38]
Chr1:9667622 [GRCh37]
Chr1:1p36.22		 uncertain significance
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1		 pathogenic
NM_001130924.3(TMEM201):c.42C>G (p.Ala14=) single nucleotide variant not provided [RCV003422529] Chr1:9588972 [GRCh38]
Chr1:9649030 [GRCh37]
Chr1:1p36.22		 likely benign
GRCh37/hg19 1p36.31-36.21(chr1:6330828-12910774)x1 copy number loss not specified [RCV003987128] Chr1:6330828..12910774 [GRCh37]
Chr1:1p36.31-36.21		 pathogenic
NM_001130924.3(TMEM201):c.1302C>A (p.Phe434Leu) single nucleotide variant not specified [RCV004467461] Chr1:9607698 [GRCh38]
Chr1:9667756 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1403A>G (p.Tyr468Cys) single nucleotide variant not specified [RCV004467463] Chr1:9609849 [GRCh38]
Chr1:9669907 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.155A>G (p.Asn52Ser) single nucleotide variant not specified [RCV004467464] Chr1:9595931 [GRCh38]
Chr1:9655989 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1864A>G (p.Thr622Ala) single nucleotide variant not specified [RCV004467469] Chr1:9611851 [GRCh38]
Chr1:9671909 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.409G>A (p.Ala137Thr) single nucleotide variant not specified [RCV004467472] Chr1:9597033 [GRCh38]
Chr1:9657091 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1223C>T (p.Pro408Leu) single nucleotide variant not specified [RCV004467460] Chr1:9607619 [GRCh38]
Chr1:9667677 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.163A>G (p.Thr55Ala) single nucleotide variant not specified [RCV004467465] Chr1:9595939 [GRCh38]
Chr1:9655997 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1907G>A (p.Arg636His) single nucleotide variant not specified [RCV004467470] Chr1:9612989 [GRCh38]
Chr1:9673047 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1327T>A (p.Ser443Thr) single nucleotide variant not specified [RCV004467462] Chr1:9607723 [GRCh38]
Chr1:9667781 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.1681T>G (p.Ser561Ala) single nucleotide variant not specified [RCV004467466] Chr1:9610721 [GRCh38]
Chr1:9670779 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.493C>T (p.Arg165Trp) single nucleotide variant not specified [RCV004467473] Chr1:9598512 [GRCh38]
Chr1:9658570 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.185G>A (p.Arg62His) single nucleotide variant not specified [RCV004467468] Chr1:9595961 [GRCh38]
Chr1:9656019 [GRCh37]
Chr1:1p36.22		 uncertain significance
NM_001130924.3(TMEM201):c.728G>T (p.Gly243Val) single nucleotide variant not specified [RCV004467474] Chr1:9601226 [GRCh38]
Chr1:9661284 [GRCh37]
Chr1:1p36.22		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6518
Count of miRNA genes:1089
Interacting mature miRNAs:1350
Transcripts:ENST00000340305, ENST00000340381, ENST00000377376, ENST00000416541, ENST00000508400, ENST00000510900
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D1S1338  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3719,664,833 - 9,665,111UniSTSGRCh37
Build 3619,587,420 - 9,587,698RGDNCBI36
Celera18,771,033 - 8,771,311RGD
Cytogenetic Map1p36.22UniSTS
HuRef18,815,572 - 8,815,850UniSTS
SHGC-74196  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3719,664,870 - 9,664,996UniSTSGRCh37
Build 3619,587,457 - 9,587,583RGDNCBI36
Celera18,771,070 - 8,771,196RGD
Cytogenetic Map1p36.22UniSTS
HuRef18,815,609 - 8,815,735UniSTS
TNG Radiation Hybrid Map14649.0UniSTS
GeneMap99-GB4 RH Map141.96UniSTS
SHGC-74172  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3719,663,588 - 9,663,754UniSTSGRCh37
Build 3619,586,175 - 9,586,341RGDNCBI36
Celera18,769,788 - 8,769,954RGD
Cytogenetic Map1p36.22UniSTS
HuRef18,814,327 - 8,814,493UniSTS
TNG Radiation Hybrid Map14630.0UniSTS
GeneMap99-GB4 RH Map132.73UniSTS
NCBI RH Map143.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 148 22 313 27 405 28 1241 696 993 92 806 231 8 5 955
Low 2290 2702 1408 591 1277 432 3115 1497 2740 327 654 1382 167 1 1199 1833 5 1
Below cutoff 1 266 5 5 267 5 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001010866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006710417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_244785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI685174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE676679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG828926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA603558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000340305   ⟹   ENSP00000344772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19,588,922 - 9,604,954 (+)Ensembl
RefSeq Acc Id: ENST00000340381   ⟹   ENSP00000344503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19,588,911 - 9,614,877 (+)Ensembl
RefSeq Acc Id: ENST00000416541   ⟹   ENSP00000393626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19,596,897 - 9,614,873 (+)Ensembl
RefSeq Acc Id: ENST00000508400   ⟹   ENSP00000423430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19,607,728 - 9,613,247 (+)Ensembl
RefSeq Acc Id: ENST00000510900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19,606,214 - 9,607,685 (+)Ensembl
RefSeq Acc Id: NM_001010866   ⟹   NP_001010866
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,604,949 (+)NCBI
GRCh3719,648,932 - 9,674,935 (+)RGD
Build 3619,571,567 - 9,587,594 (+)NCBI Archive
Celera18,762,143 - 8,781,135 (+)RGD
HuRef18,799,790 - 8,825,673 (+)RGD
CHM1_119,637,484 - 9,653,579 (+)NCBI
T2T-CHM13v2.019,125,255 - 9,141,248 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001130924   ⟹   NP_001124396
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,614,877 (+)NCBI
GRCh3719,648,932 - 9,674,935 (+)RGD
Celera18,762,143 - 8,781,135 (+)RGD
HuRef18,799,790 - 8,825,673 (+)RGD
CHM1_119,637,484 - 9,663,494 (+)NCBI
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006710417   ⟹   XP_006710480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,614,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011540910   ⟹   XP_011539212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,607,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000549   ⟹   XP_016856038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,614,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000550   ⟹   XP_016856039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,614,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000551   ⟹   XP_016856040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,589,607 - 9,614,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000552   ⟹   XP_016856041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,589,356 - 9,614,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047448441   ⟹   XP_047304397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,611,870 (+)NCBI
RefSeq Acc Id: XM_054334893   ⟹   XP_054190868
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBI
RefSeq Acc Id: XM_054334894   ⟹   XP_054190869
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBI
RefSeq Acc Id: XM_054334895   ⟹   XP_054190870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,951 - 9,151,173 (+)NCBI
RefSeq Acc Id: XM_054334896   ⟹   XP_054190871
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,700 - 9,151,173 (+)NCBI
RefSeq Acc Id: XM_054334897   ⟹   XP_054190872
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,255 - 9,151,173 (+)NCBI
RefSeq Acc Id: XM_054334898   ⟹   XP_054190873
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,255 - 9,148,168 (+)NCBI
RefSeq Acc Id: XM_054334899   ⟹   XP_054190874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.019,125,255 - 9,143,942 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001124396   ⟸   NM_001130924
- Peptide Label: isoform 1
- UniProtKB: B9EH90 (UniProtKB/Swiss-Prot),   Q5SNT3 (UniProtKB/Swiss-Prot),   Q5SNT2 (UniProtKB/Swiss-Prot),   H0Y4R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001010866   ⟸   NM_001010866
- Peptide Label: isoform 2
- UniProtKB: Q5SNT2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006710480   ⟸   XM_006710417
- Peptide Label: isoform X4
- UniProtKB: H0Y4R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011539212   ⟸   XM_011540910
- Peptide Label: isoform X6
- UniProtKB: Q5SNT2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016856038   ⟸   XM_017000549
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016856039   ⟸   XM_017000550
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016856040   ⟸   XM_017000551
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016856041   ⟸   XM_017000552
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000423430   ⟸   ENST00000508400
RefSeq Acc Id: ENSP00000393626   ⟸   ENST00000416541
RefSeq Acc Id: ENSP00000344503   ⟸   ENST00000340381
RefSeq Acc Id: ENSP00000344772   ⟸   ENST00000340305
RefSeq Acc Id: XP_047304397   ⟸   XM_047448441
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054190868   ⟸   XM_054334893
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054190869   ⟸   XM_054334894
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054190872   ⟸   XM_054334897
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054190873   ⟸   XM_054334898
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054190874   ⟸   XM_054334899
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054190871   ⟸   XM_054334896
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054190870   ⟸   XM_054334895
- Peptide Label: isoform X3
Protein Domains
Ima1 N-terminal   Transmembrane protein 201 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SNT2-F1-model_v2 AlphaFold Q5SNT2 1-666 view protein structure

Promoters
RGD ID:6787015
Promoter ID:HG_KWN:564
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000377376,   NM_001010866,   NM_001130924
Position:
Human AssemblyChrPosition (strand)Source
Build 3619,571,086 - 9,571,586 (+)MPROMDB
RGD ID:6854006
Promoter ID:EPDNEW_H168
Type:initiation region
Name:TMEM201_1
Description:transmembrane protein 201
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3819,588,911 - 9,588,971EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:33719 AgrOrtholog
COSMIC TMEM201 COSMIC
Ensembl Genes ENSG00000188807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000340305 ENTREZGENE
  ENST00000340305.9 UniProtKB/Swiss-Prot
  ENST00000340381 ENTREZGENE
  ENST00000340381.11 UniProtKB/Swiss-Prot
  ENST00000416541 ENTREZGENE
  ENST00000416541.5 UniProtKB/TrEMBL
  ENST00000508400.1 UniProtKB/TrEMBL
GTEx ENSG00000188807 GTEx
HGNC ID HGNC:33719 ENTREZGENE
Human Proteome Map TMEM201 Human Proteome Map
InterPro Ima1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM201 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM201_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:199953 UniProtKB/Swiss-Prot
NCBI Gene 199953 ENTREZGENE
PANTHER PTHR28646 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 201 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF2448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ima1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162406359 PharmGKB
UniProt B9EH90 ENTREZGENE
  H0Y4R5 ENTREZGENE, UniProtKB/TrEMBL
  H0Y994_HUMAN UniProtKB/TrEMBL
  Q5SNT2 ENTREZGENE
  Q5SNT3 ENTREZGENE
  TM201_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B9EH90 UniProtKB/Swiss-Prot
  Q5SNT3 UniProtKB/Swiss-Prot