CDY5P (chromodomain Y-linked 5 pseudogene) - Rat Genome Database

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Gene: CDY5P (chromodomain Y-linked 5 pseudogene) Homo sapiens
Analyze
Symbol: CDY5P
Name: chromodomain Y-linked 5 pseudogene
RGD ID: 1604160
HGNC Page HGNC:23850
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: chromodomain protein, Y-linked 5 pseudogene
Related Functional Gene: CDY1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y17,721,197 - 17,723,195 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY17,721,598 - 17,723,177 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y19,833,077 - 19,835,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y18,342,471 - 18,344,469 (+)NCBINCBI36Build 36hg18NCBI36
CeleraY5,182,111 - 5,183,690 (+)NCBICelera
Cytogenetic MapYq11.222NCBI
HuRefY14,315,734 - 14,317,313 (+)NCBIHuRef
T2T-CHM13v2.0Y18,627,749 - 18,629,747 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:84
Interacting mature miRNAs:85
Transcripts:ENST00000411487
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
sY2832  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,345,821 - 20,346,076UniSTSGRCh37
GRCh37Y19,833,702 - 19,833,957UniSTSGRCh37
CeleraY5,182,335 - 5,182,590UniSTS
Cytogenetic MapYq11.222UniSTS
HuRefY14,315,958 - 14,316,213UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system reproductive system respiratory system adipose tissue appendage
High
Medium
Low
Below cutoff 1 1 1 1 1 1 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY17,721,598 - 17,723,177 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CDY5P COSMIC
Ensembl Genes ENSG00000226449 Ensembl
GTEx ENSG00000226449 GTEx
HGNC ID HGNC:23850 ENTREZGENE
Human Proteome Map CDY5P Human Proteome Map
NCBI Gene 378008 ENTREZGENE
PharmGKB PA134987271 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-19 CDY5P  chromodomain Y-linked 5 pseudogene    chromodomain protein, Y-linked 5 pseudogene  Symbol and/or name change 5135510 APPROVED