FAM222B (family with sequence similarity 222 member B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FAM222B (family with sequence similarity 222 member B) Homo sapiens
Analyze
Symbol: FAM222B
Name: family with sequence similarity 222 member B
RGD ID: 1603991
HGNC Page HGNC:25563
Description: Located in nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C17orf63; family with sequence similarity 222, member B; FLJ10700; hypothetical protein LOC55731; uncharacterized protein C17orf63
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,755,980 - 28,855,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,755,980 - 28,855,232 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,082,998 - 27,169,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,107,123 - 24,193,967 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,942,277 - 24,028,763 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,291,789 - 23,378,208 (-)NCBIHuRef
CHM1_11727,145,479 - 27,232,353 (-)NCBICHM1_1
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15489334   PMID:16344560   PMID:16712791   PMID:23602568   PMID:27587990   PMID:32296183   PMID:32344865   PMID:32393512   PMID:32513696   PMID:33277362  
PMID:33961781   PMID:37499664   PMID:38360978  


Genomics

Comparative Map Data
FAM222B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,755,980 - 28,855,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,755,980 - 28,855,232 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,082,998 - 27,169,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,107,123 - 24,193,967 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,942,277 - 24,028,763 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,291,789 - 23,378,208 (-)NCBIHuRef
CHM1_11727,145,479 - 27,232,353 (-)NCBICHM1_1
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBIT2T-CHM13v2.0
Fam222b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,985,516 - 78,048,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,985,486 - 78,047,526 (+)EnsemblGRCm39 Ensembl
GRCm381178,094,690 - 78,157,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,094,660 - 78,156,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,908,175 - 77,970,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,931,821 - 77,972,281 (+)NCBIMGSCv36mm8
Celera1185,594,197 - 85,657,081 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Fam222b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,484,651 - 63,550,422 (+)NCBIGRCr8
mRatBN7.21062,986,571 - 63,052,350 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,986,571 - 63,052,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,617,899 - 67,684,505 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,123,264 - 67,189,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,595,058 - 62,660,992 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,351,245 - 65,416,869 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,351,245 - 65,416,869 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,217,748 - 66,283,043 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,478,951 - 64,482,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1061,964,653 - 62,030,001 (+)NCBICelera
Cytogenetic Map10q25NCBI
Fam222b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,365,721 - 4,406,517 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,334,174 - 4,406,528 (+)NCBIChiLan1.0ChiLan1.0
FAM222B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,602,157 - 35,703,243 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,483,319 - 37,583,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,931,416 - 28,019,356 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,437,843 - 28,526,048 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,467,785 - 28,526,048 (+)Ensemblpanpan1.1panPan2
FAM222B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,942,328 - 43,017,053 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,944,687 - 43,017,420 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,097,749 - 42,181,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,760,181 - 43,843,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,761,621 - 43,835,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,543,069 - 42,627,219 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,835,269 - 42,919,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,914,060 - 42,997,880 (-)NCBIUU_Cfam_GSD_1.0
Fam222b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,085,171 - 42,159,246 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,963,030 - 5,037,194 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,963,116 - 5,037,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM222B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,986,165 - 45,076,178 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,986,075 - 45,076,187 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,004,506 - 47,033,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM222B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,520,697 - 22,597,853 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,520,699 - 22,585,785 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,505,192 - 7,599,788 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam222b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,323,173 - 1,368,476 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,323,173 - 1,399,835 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM222B
34 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001077498.2(FAM222B):c.-41+6185G>A single nucleotide variant Lung cancer [RCV000100401] Chr17:28836497 [GRCh38]
Chr17:27163515 [GRCh37]
Chr17:17q11.2		 uncertain significance
GRCh38/hg38 17q11.2(chr17:28283125-28904397)x3 copy number gain See cases [RCV000136494] Chr17:28283125..28904397 [GRCh38]
Chr17:26610151..27231415 [GRCh37]
Chr17:23634278..24255541 [NCBI36]
Chr17:17q11.2		 benign
GRCh38/hg38 17q11.2(chr17:28757283-29216419)x3 copy number gain See cases [RCV000142450] Chr17:28757283..29216419 [GRCh38]
Chr17:27084301..27543437 [GRCh37]
Chr17:24108428..24567563 [NCBI36]
Chr17:17q11.2		 uncertain significance
GRCh37/hg19 17q11.1-11.2(chr17:25403446-31685464)x3 copy number gain not provided [RCV000762776] Chr17:25403446..31685464 [GRCh37]
Chr17:17q11.1-11.2		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_001077498.3(FAM222B):c.1520A>G (p.Gln507Arg) single nucleotide variant not specified [RCV004309032] Chr17:28758439 [GRCh38]
Chr17:27085457 [GRCh37]
Chr17:17q11.2		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q11.1-11.2(chr17:25248166-30645676)x1 copy number loss Mitogen-activated protein kinase kinase inhibitor response [RCV000626439] Chr17:25248166..30645676 [GRCh37]
Chr17:17q11.1-11.2		 drug response
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p11.2-q11.2(chr17:21279289-27474974)x2 copy number gain not provided [RCV000739439] Chr17:21279289..27474974 [GRCh37]
Chr17:17p11.2-q11.2		 likely pathogenic
GRCh37/hg19 17q11.2(chr17:27129095-27129815)x1 copy number loss not provided [RCV000751977] Chr17:27129095..27129815 [GRCh37]
Chr17:17q11.2		 benign
NM_001077498.3(FAM222B):c.1624G>A (p.Gly542Ser) single nucleotide variant not provided [RCV000961482] Chr17:28758335 [GRCh38]
Chr17:27085353 [GRCh37]
Chr17:17q11.2		 benign
NM_001077498.3(FAM222B):c.1638C>T (p.Pro546=) single nucleotide variant not provided [RCV000974421] Chr17:28758321 [GRCh38]
Chr17:27085339 [GRCh37]
Chr17:17q11.2		 benign
GRCh37/hg19 17p11.2-q21.2(chr17:21690653-38772647)x3 copy number gain not provided [RCV000846852] Chr17:21690653..38772647 [GRCh37]
Chr17:17p11.2-q21.2		 pathogenic
GRCh37/hg19 17q11.1-11.2(chr17:25274363-28450707)x3 copy number gain not provided [RCV001006886] Chr17:25274363..28450707 [GRCh37]
Chr17:17q11.1-11.2		 pathogenic
GRCh37/hg19 17p11.2-q11.2(chr17:21690653-28281232) copy number gain not specified [RCV002052591] Chr17:21690653..28281232 [GRCh37]
Chr17:17p11.2-q11.2		 pathogenic
NC_000017.10:g.(?_26684694)_(27581367_?)dup duplication not provided [RCV003116316] Chr17:26684694..27581367 [GRCh37]
Chr17:17q11.2		 uncertain significance
NC_000017.10:g.(?_26684694)_(29701173_?)dup duplication not provided [RCV003123018] Chr17:26684694..29701173 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1650G>C (p.Glu550Asp) single nucleotide variant not specified [RCV004156958] Chr17:28758309 [GRCh38]
Chr17:27085327 [GRCh37]
Chr17:17q11.2		 likely benign
NM_001077498.3(FAM222B):c.316A>G (p.Lys106Glu) single nucleotide variant not specified [RCV004128545] Chr17:28759643 [GRCh38]
Chr17:27086661 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1636C>T (p.Pro546Ser) single nucleotide variant not specified [RCV004224272] Chr17:28758323 [GRCh38]
Chr17:27085341 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1033C>A (p.Leu345Met) single nucleotide variant not specified [RCV004093203] Chr17:28758926 [GRCh38]
Chr17:27085944 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.581A>T (p.Gln194Leu) single nucleotide variant not specified [RCV004233495] Chr17:28759378 [GRCh38]
Chr17:27086396 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1286C>T (p.Pro429Leu) single nucleotide variant not specified [RCV004148390] Chr17:28758673 [GRCh38]
Chr17:27085691 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1535A>C (p.Gln512Pro) single nucleotide variant not specified [RCV004173861] Chr17:28758424 [GRCh38]
Chr17:27085442 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.247A>G (p.Thr83Ala) single nucleotide variant not specified [RCV004111966] Chr17:28759712 [GRCh38]
Chr17:27086730 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1432G>T (p.Gly478Trp) single nucleotide variant not specified [RCV004121004] Chr17:28758527 [GRCh38]
Chr17:27085545 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1250C>T (p.Ala417Val) single nucleotide variant not specified [RCV004213759] Chr17:28758709 [GRCh38]
Chr17:27085727 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.899G>A (p.Arg300His) single nucleotide variant not specified [RCV004080520] Chr17:28759060 [GRCh38]
Chr17:27086078 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.425G>A (p.Ser142Asn) single nucleotide variant not specified [RCV004173981] Chr17:28759534 [GRCh38]
Chr17:27086552 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1186C>T (p.Arg396Cys) single nucleotide variant not specified [RCV004251538] Chr17:28758773 [GRCh38]
Chr17:27085791 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.805G>T (p.Val269Leu) single nucleotide variant not specified [RCV004275967] Chr17:28759154 [GRCh38]
Chr17:27086172 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1474G>A (p.Gly492Arg) single nucleotide variant not specified [RCV004297083] Chr17:28758485 [GRCh38]
Chr17:27085503 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.619G>A (p.Gly207Ser) single nucleotide variant not specified [RCV004248773] Chr17:28759340 [GRCh38]
Chr17:27086358 [GRCh37]
Chr17:17q11.2		 uncertain significance
GRCh37/hg19 17q11.1-11.2(chr17:25263507-27829791)x3 copy number gain Developmental delay with or without intellectual impairment or behavioral abnormalities [RCV003329553] Chr17:25263507..27829791 [GRCh37]
Chr17:17q11.1-11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1003G>A (p.Ala335Thr) single nucleotide variant not specified [RCV004346026] Chr17:28758956 [GRCh38]
Chr17:27085974 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1580G>A (p.Arg527Gln) single nucleotide variant not specified [RCV004381261] Chr17:28758379 [GRCh38]
Chr17:27085397 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.622T>G (p.Leu208Val) single nucleotide variant not specified [RCV004381264] Chr17:28759337 [GRCh38]
Chr17:27086355 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.433G>C (p.Ala145Pro) single nucleotide variant not specified [RCV004381263] Chr17:28759526 [GRCh38]
Chr17:27086544 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.1337A>G (p.Asn446Ser) single nucleotide variant not specified [RCV004381260] Chr17:28758622 [GRCh38]
Chr17:27085640 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.7G>A (p.Ala3Thr) single nucleotide variant not specified [RCV004381265] Chr17:28766661 [GRCh38]
Chr17:27093679 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.326C>G (p.Ala109Gly) single nucleotide variant not specified [RCV004381262] Chr17:28759633 [GRCh38]
Chr17:27086651 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.995C>T (p.Ala332Val) single nucleotide variant not specified [RCV004381267] Chr17:28758964 [GRCh38]
Chr17:27085982 [GRCh37]
Chr17:17q11.2		 uncertain significance
NM_001077498.3(FAM222B):c.925C>T (p.Arg309Trp) single nucleotide variant not specified [RCV004381266] Chr17:28759034 [GRCh38]
Chr17:27086052 [GRCh37]
Chr17:17q11.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8396
Count of miRNA genes:1168
Interacting mature miRNAs:1404
Transcripts:ENST00000341217, ENST00000452648, ENST00000577376, ENST00000577513, ENST00000577682, ENST00000579381, ENST00000581229, ENST00000581381, ENST00000581407, ENST00000582059, ENST00000582266, ENST00000583307, ENST00000583522, ENST00000583953, ENST00000584059
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH93591  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371727,084,527 - 27,084,716UniSTSGRCh37
Build 361724,108,654 - 24,108,843RGDNCBI36
Celera1723,943,808 - 23,943,997RGD
Cytogenetic Map17q11.2UniSTS
HuRef1723,293,320 - 23,293,509UniSTS
RH39311  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371727,105,911 - 27,106,049UniSTSGRCh37
Build 361724,130,037 - 24,130,175RGDNCBI36
Celera1723,965,248 - 23,965,386RGD
Cytogenetic Map17q11.2UniSTS
HuRef1723,314,663 - 23,314,801UniSTS
RH47382  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371727,083,774 - 27,083,915UniSTSGRCh37
Build 361724,107,901 - 24,108,042RGDNCBI36
Celera1723,943,055 - 23,943,196RGD
Cytogenetic Map17q11.2UniSTS
HuRef1723,292,567 - 23,292,708UniSTS
SHGC-80705  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371727,143,755 - 27,144,055UniSTSGRCh37
Build 361724,167,881 - 24,168,181RGDNCBI36
Celera1724,003,407 - 24,003,707RGD
Cytogenetic Map17q11.2UniSTS
HuRef1723,352,820 - 23,353,120UniSTS
TNG Radiation Hybrid Map1710927.0UniSTS
D17S2153  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371727,084,488 - 27,084,624UniSTSGRCh37
Build 361724,108,615 - 24,108,751RGDNCBI36
Celera1723,943,769 - 23,943,905RGD
Cytogenetic Map17q11.2UniSTS
HuRef1723,293,281 - 23,293,417UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1721 994 960 198 698 88 2461 1437 1418 260 1242 1280 123 557 1687 3
Low 717 1987 766 426 1244 377 1896 759 2316 159 218 333 52 1 647 1101 3 2
Below cutoff 1 10 9 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC010761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC024267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB156081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA185693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA787679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA789853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA887444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB453514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC374179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC376581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC381712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC399026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC400943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ695200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY006495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY012898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY040104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000341217   ⟹   ENSP00000343115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,792 (-)Ensembl
RefSeq Acc Id: ENST00000452648   ⟹   ENSP00000413645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,812,435 (-)Ensembl
RefSeq Acc Id: ENST00000577376   ⟹   ENSP00000464355
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,790 (-)Ensembl
RefSeq Acc Id: ENST00000577513   ⟹   ENSP00000463642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,855,232 (-)Ensembl
RefSeq Acc Id: ENST00000577682   ⟹   ENSP00000463278
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,790 (-)Ensembl
RefSeq Acc Id: ENST00000579381   ⟹   ENSP00000464291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,759,850 - 28,842,823 (-)Ensembl
RefSeq Acc Id: ENST00000581229   ⟹   ENSP00000464299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,783 (-)Ensembl
RefSeq Acc Id: ENST00000581381   ⟹   ENSP00000463136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,759,592 - 28,842,792 (-)Ensembl
RefSeq Acc Id: ENST00000581407   ⟹   ENSP00000462419
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,790 (-)Ensembl
RefSeq Acc Id: ENST00000582059   ⟹   ENSP00000462251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,812,224 (-)Ensembl
RefSeq Acc Id: ENST00000582266   ⟹   ENSP00000462534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,784 (-)Ensembl
RefSeq Acc Id: ENST00000583307   ⟹   ENSP00000463296
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,727 (-)Ensembl
RefSeq Acc Id: ENST00000583522   ⟹   ENSP00000462540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,842,839 (-)Ensembl
RefSeq Acc Id: ENST00000583953   ⟹   ENSP00000463753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,755,980 - 28,854,990 (-)Ensembl
RefSeq Acc Id: ENST00000584059   ⟹   ENSP00000464019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1728,759,828 - 28,767,104 (-)Ensembl
RefSeq Acc Id: NM_001077498   ⟹   NP_001070966
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
GRCh371727,082,996 - 27,169,857 (-)NCBI
Build 361724,107,123 - 24,193,967 (-)NCBI Archive
Celera1723,942,277 - 24,028,763 (-)RGD
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,733,858 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288631   ⟹   NP_001275560
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,733,858 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288632   ⟹   NP_001275561
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288633   ⟹   NP_001275562
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,733,858 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288634   ⟹   NP_001275563
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,201,979 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,755,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288635   ⟹   NP_001275564
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288636   ⟹   NP_001275565
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288637   ⟹   NP_001275566
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288638   ⟹   NP_001275567
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288639   ⟹   NP_001275568
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001288640   ⟹   NP_001275569
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,733,858 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018182   ⟹   NP_060652
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
GRCh371727,082,996 - 27,169,857 (-)NCBI
Build 361724,107,123 - 24,193,967 (-)NCBI Archive
Celera1723,942,277 - 24,028,763 (-)RGD
HuRef1723,291,789 - 23,378,224 (-)NCBI
CHM1_11727,145,479 - 27,232,369 (-)NCBI
T2T-CHM13v2.01729,698,772 - 29,785,567 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047436371   ⟹   XP_047292327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436372   ⟹   XP_047292328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
RefSeq Acc Id: XM_047436373   ⟹   XP_047292329
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,842,790 (-)NCBI
RefSeq Acc Id: XM_047436374   ⟹   XP_047292330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436375   ⟹   XP_047292331
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,808,631 (-)NCBI
RefSeq Acc Id: XM_047436376   ⟹   XP_047292332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436377   ⟹   XP_047292333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
RefSeq Acc Id: XM_047436378   ⟹   XP_047292334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
RefSeq Acc Id: XM_047436379   ⟹   XP_047292335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436380   ⟹   XP_047292336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
RefSeq Acc Id: XM_047436381   ⟹   XP_047292337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436382   ⟹   XP_047292338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,808,631 (-)NCBI
RefSeq Acc Id: XM_047436383   ⟹   XP_047292339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,855,004 (-)NCBI
RefSeq Acc Id: XM_047436384   ⟹   XP_047292340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,777,776 (-)NCBI
RefSeq Acc Id: XM_047436385   ⟹   XP_047292341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
RefSeq Acc Id: XM_047436386   ⟹   XP_047292342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,755,980 - 28,812,471 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001070966 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275560 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275561 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275562 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275563 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275564 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275565 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275566 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275567 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275568 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275569 (Get FASTA)   NCBI Sequence Viewer  
  NP_060652 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292327 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292328 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292329 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292330 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292331 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292332 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292333 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292334 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292335 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292336 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292337 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292338 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292339 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292340 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292341 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292342 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH21228 (Get FASTA)   NCBI Sequence Viewer  
  BAA90974 (Get FASTA)   NCBI Sequence Viewer  
  BAA91757 (Get FASTA)   NCBI Sequence Viewer  
  BAB15306 (Get FASTA)   NCBI Sequence Viewer  
  BAG51950 (Get FASTA)   NCBI Sequence Viewer  
  BAG53087 (Get FASTA)   NCBI Sequence Viewer  
  BAG61441 (Get FASTA)   NCBI Sequence Viewer  
  EAW51143 (Get FASTA)   NCBI Sequence Viewer  
  EAW51144 (Get FASTA)   NCBI Sequence Viewer  
  EAW51145 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000343115.7
  ENSP00000413645
  ENSP00000413645.3
  ENSP00000462251.1
  ENSP00000462419
  ENSP00000462419.1
  ENSP00000462534.1
  ENSP00000462540.1
  ENSP00000463278.1
  ENSP00000463296
  ENSP00000463296.2
  ENSP00000463642
  ENSP00000463642.2
  ENSP00000463753.1
  ENSP00000464019.1
  ENSP00000464291.1
  ENSP00000464299
  ENSP00000464299.2
  ENSP00000464355
  ENSP00000464355.2
GenBank Protein Q8WU58 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001070966   ⟸   NM_001077498
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060652   ⟸   NM_018182
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275569   ⟸   NM_001288640
- Peptide Label: isoform 3
- UniProtKB: B4DRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275560   ⟸   NM_001288631
- Peptide Label: isoform 1
- UniProtKB: B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275562   ⟸   NM_001288633
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275564   ⟸   NM_001288635
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275566   ⟸   NM_001288637
- Peptide Label: isoform 3
- UniProtKB: B4DRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275568   ⟸   NM_001288639
- Peptide Label: isoform 3
- UniProtKB: B4DRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275567   ⟸   NM_001288638
- Peptide Label: isoform 3
- UniProtKB: B4DRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275561   ⟸   NM_001288632
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275565   ⟸   NM_001288636
- Peptide Label: isoform 3
- UniProtKB: B4DRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275563   ⟸   NM_001288634
- Peptide Label: isoform 2
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   B3KTH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000462419   ⟸   ENST00000581407
RefSeq Acc Id: ENSP00000463136   ⟸   ENST00000581381
RefSeq Acc Id: ENSP00000464299   ⟸   ENST00000581229
RefSeq Acc Id: ENSP00000462534   ⟸   ENST00000582266
RefSeq Acc Id: ENSP00000462251   ⟸   ENST00000582059
RefSeq Acc Id: ENSP00000462540   ⟸   ENST00000583522
RefSeq Acc Id: ENSP00000463296   ⟸   ENST00000583307
RefSeq Acc Id: ENSP00000463753   ⟸   ENST00000583953
RefSeq Acc Id: ENSP00000413645   ⟸   ENST00000452648
RefSeq Acc Id: ENSP00000464019   ⟸   ENST00000584059
RefSeq Acc Id: ENSP00000464355   ⟸   ENST00000577376
RefSeq Acc Id: ENSP00000463278   ⟸   ENST00000577682
RefSeq Acc Id: ENSP00000463642   ⟸   ENST00000577513
RefSeq Acc Id: ENSP00000464291   ⟸   ENST00000579381
RefSeq Acc Id: ENSP00000343115   ⟸   ENST00000341217
RefSeq Acc Id: XP_047292327   ⟸   XM_047436371
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292337   ⟸   XM_047436381
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292332   ⟸   XM_047436376
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292339   ⟸   XM_047436383
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292335   ⟸   XM_047436379
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292330   ⟸   XM_047436374
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292329   ⟸   XM_047436373
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292328   ⟸   XM_047436372
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292334   ⟸   XM_047436378
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292333   ⟸   XM_047436377
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292342   ⟸   XM_047436386
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292336   ⟸   XM_047436380
- Peptide Label: isoform X1
- UniProtKB: Q8WU58 (UniProtKB/Swiss-Prot),   Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292341   ⟸   XM_047436385
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292338   ⟸   XM_047436382
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292331   ⟸   XM_047436375
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047292340   ⟸   XM_047436384
- Peptide Label: isoform X1
- UniProtKB: Q9NVJ4 (UniProtKB/Swiss-Prot),   Q9H6F3 (UniProtKB/Swiss-Prot),   Q8WU58 (UniProtKB/Swiss-Prot),   Q9NXN6 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WU58-F1-model_v2 AlphaFold Q8WU58 1-562 view protein structure

Promoters
RGD ID:7234449
Promoter ID:EPDNEW_H22969
Type:initiation region
Name:C17orf63_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381728,842,783 - 28,842,843EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25563 AgrOrtholog
COSMIC FAM222B COSMIC
Ensembl Genes ENSG00000173065 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000341217.7 UniProtKB/TrEMBL
  ENST00000452648 ENTREZGENE
  ENST00000452648.8 UniProtKB/Swiss-Prot
  ENST00000577376 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000577376.6 UniProtKB/Swiss-Prot
  ENST00000577513 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000577513.6 UniProtKB/Swiss-Prot
  ENST00000577682.6 UniProtKB/TrEMBL
  ENST00000579381.1 UniProtKB/TrEMBL
  ENST00000581229 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000581229.6 UniProtKB/Swiss-Prot
  ENST00000581407 ENTREZGENE
  ENST00000581407.6 UniProtKB/Swiss-Prot
  ENST00000582059.6 UniProtKB/TrEMBL
  ENST00000582266.6 UniProtKB/TrEMBL
  ENST00000583307 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000583307.6 UniProtKB/Swiss-Prot
  ENST00000583522.6 UniProtKB/TrEMBL
  ENST00000583953.6 UniProtKB/TrEMBL
  ENST00000584059.1 UniProtKB/TrEMBL
GTEx ENSG00000173065 GTEx
HGNC ID HGNC:25563 ENTREZGENE
Human Proteome Map FAM222B Human Proteome Map
InterPro FAM222 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55731 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 55731 ENTREZGENE
PANTHER PROTEIN FAM222B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16070 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM222A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672246 PharmGKB
UniProt B3KQ88_HUMAN UniProtKB/TrEMBL
  B3KTH5 ENTREZGENE, UniProtKB/TrEMBL
  B4DRX9 ENTREZGENE, UniProtKB/TrEMBL
  F222B_HUMAN UniProtKB/Swiss-Prot
  J3KSK8_HUMAN UniProtKB/TrEMBL
  J3QKY8_HUMAN UniProtKB/TrEMBL
  J3QLP2_HUMAN UniProtKB/TrEMBL
  J3QR32_HUMAN UniProtKB/TrEMBL
  J3QRM5_HUMAN UniProtKB/TrEMBL
  J3QRR9_HUMAN UniProtKB/TrEMBL
  Q8WU58 ENTREZGENE
  Q9H6F3 ENTREZGENE
  Q9NVJ4 ENTREZGENE
  Q9NXN6 ENTREZGENE
UniProt Secondary Q9H6F3 UniProtKB/Swiss-Prot
  Q9NVJ4 UniProtKB/Swiss-Prot
  Q9NXN6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 FAM222B  family with sequence similarity 222 member B    family with sequence similarity 222, member B  Symbol and/or name change 5135510 APPROVED
2012-05-08 FAM222B  family with sequence similarity 222, member B  C17orf63  chromosome 17 open reading frame 63  Symbol and/or name change 5135510 APPROVED