ZBED5 (zinc finger BED-type containing 5) - Rat Genome Database

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Gene: ZBED5 (zinc finger BED-type containing 5) Homo sapiens
Analyze
Symbol: ZBED5
Name: zinc finger BED-type containing 5
RGD ID: 1603615
HGNC Page HGNC:30803
Description: Predicted to enable DNA binding activity and metal ion binding activity.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Buster1; FLJ41239; transposon-derived Buster1 transposase-like protein; zinc finger BED domain-containing protein 5; zinc finger, BED-type containing 5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,852,706 - 10,858,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,812,074 - 10,858,796 (-)EnsemblGRCh38hg38GRCh38
GRCh371110,874,253 - 10,879,600 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,830,827 - 10,836,188 (-)NCBINCBI36Build 36hg18NCBI36
Celera1110,995,917 - 11,001,286 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef1110,547,165 - 10,552,534 (-)NCBIHuRef
CHM1_11110,873,300 - 10,878,669 (-)NCBICHM1_1
T2T-CHM13v2.01110,937,686 - 10,943,033 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10607616   PMID:12477932   PMID:14702039   PMID:15231748   PMID:16344560   PMID:18976975   PMID:20379614   PMID:20877624   PMID:21654808   PMID:21873635   PMID:23166581   PMID:23533661  
PMID:29467282   PMID:33961781   PMID:35914814  


Genomics

Comparative Map Data
ZBED5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,852,706 - 10,858,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,812,074 - 10,858,796 (-)EnsemblGRCh38hg38GRCh38
GRCh371110,874,253 - 10,879,600 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,830,827 - 10,836,188 (-)NCBINCBI36Build 36hg18NCBI36
Celera1110,995,917 - 11,001,286 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef1110,547,165 - 10,552,534 (-)NCBIHuRef
CHM1_11110,873,300 - 10,878,669 (-)NCBICHM1_1
T2T-CHM13v2.01110,937,686 - 10,943,033 (-)NCBIT2T-CHM13v2.0
Zbed5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,924,564 - 129,937,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,924,564 - 129,932,464 (+)EnsemblGRCm39 Ensembl
GRCm385129,895,723 - 129,908,509 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,895,723 - 129,903,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,371,593 - 130,379,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,180,426 - 130,188,317 (+)NCBIMGSCv36mm8
Celera5126,898,278 - 126,906,178 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Zbed5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,443,687 - 32,449,817 (-)NCBIGRCr8
mRatBN7.21226,807,652 - 26,813,706 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,807,600 - 26,813,664 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,954,944 - 27,960,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,565,481 - 28,571,006 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,626,976 - 27,632,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,308,469 - 30,314,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,308,469 - 30,314,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,253,295 - 32,259,362 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,855,832 - 27,861,887 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,521,413 - 28,527,467 (-)NCBICelera
Cytogenetic Map12q13NCBI
Zbed5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,436,464 - 26,438,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,436,218 - 26,443,183 (-)NCBIChiLan1.0ChiLan1.0
ZBED5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2913,293,896 - 13,299,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,256,715 - 13,261,971 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,016,517 - 11,021,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,711,319 - 10,716,860 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,711,476 - 10,713,557 (-)Ensemblpanpan1.1panPan2
ZBED5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12134,010,883 - 34,016,134 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2134,010,884 - 34,015,974 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2133,575,536 - 33,580,626 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02134,887,708 - 34,892,956 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2134,886,109 - 34,892,928 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12134,147,894 - 34,152,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02134,319,490 - 34,324,600 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02134,610,954 - 34,616,044 (-)NCBIUU_Cfam_GSD_1.0
Zbed5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494751,488,572 - 51,502,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365287,522,585 - 7,528,183 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365287,520,994 - 7,537,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBED5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl248,624,862 - 48,631,342 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1248,624,302 - 48,630,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2251,970,709 - 51,984,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBED5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1153,968,222 - 53,973,087 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038151,622,612 - 151,628,030 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbed5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247662,926,139 - 2,928,145 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247662,926,068 - 2,931,339 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZBED5
23 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3 copy number gain See cases [RCV000053613] Chr11:202758..31726224 [GRCh38]
Chr11:202758..31747772 [GRCh37]
Chr11:192758..31704348 [NCBI36]
Chr11:11p15.5-13		 pathogenic
NM_001143667.1(ZBED5):c.1877G>A (p.Ser626Asn) single nucleotide variant Lung cancer [RCV000109586] Chr11:10853069 [GRCh38]
Chr11:10874616 [GRCh37]
Chr11:11p15.4		 uncertain significance
GRCh38/hg38 11p15.5-15.1(chr11:446754-18904742)x3 copy number gain See cases [RCV000133997] Chr11:446754..18904742 [GRCh38]
Chr11:446754..18926289 [GRCh37]
Chr11:436754..18882865 [NCBI36]
Chr11:11p15.5-15.1		 pathogenic
GRCh38/hg38 11p15.4-15.2(chr11:9989516-16825806)x1 copy number loss See cases [RCV000136773] Chr11:9989516..16825806 [GRCh38]
Chr11:10011063..16847353 [GRCh37]
Chr11:9967639..16803929 [NCBI36]
Chr11:11p15.4-15.2		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-12(chr11:230615-37698540)x3 copy number gain See cases [RCV000511561] Chr11:230615..37698540 [GRCh37]
Chr11:11p15.5-12		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-15.3(chr11:193146-12643136) copy number gain Silver-Russell syndrome 1 [RCV000767567] Chr11:193146..12643136 [GRCh37]
Chr11:11p15.5-15.3		 pathogenic
NM_001143667.2(ZBED5):c.679A>G (p.Met227Val) single nucleotide variant not specified [RCV004289346] Chr11:10854267 [GRCh38]
Chr11:10875814 [GRCh37]
Chr11:11p15.4		 uncertain significance
GRCh37/hg19 11p15.5-14.3(chr11:230615-25584362)x3 copy number gain See cases [RCV000512225] Chr11:230615..25584362 [GRCh37]
Chr11:11p15.5-14.3		 pathogenic
GRCh37/hg19 11p15.5-13(chr11:230615-31995219)x3 copy number gain See cases [RCV000512477] Chr11:230615..31995219 [GRCh37]
Chr11:11p15.5-13		 pathogenic
GRCh37/hg19 11p15.5-15.1(chr11:230615-17099213)x3 copy number gain not provided [RCV000683372] Chr11:230615..17099213 [GRCh37]
Chr11:11p15.5-15.1		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
NM_001143667.2(ZBED5):c.1616C>T (p.Ser539Phe) single nucleotide variant not specified [RCV004302174] Chr11:10853330 [GRCh38]
Chr11:10874877 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.380C>T (p.Ala127Val) single nucleotide variant not specified [RCV004294946] Chr11:10854566 [GRCh38]
Chr11:10876113 [GRCh37]
Chr11:11p15.4		 uncertain significance
GRCh37/hg19 11p15.5-13(chr11:235934-33826995)x3 copy number gain not provided [RCV001006372] Chr11:235934..33826995 [GRCh37]
Chr11:11p15.5-13		 pathogenic
GRCh37/hg19 11p15.5-14.2(chr11:230615-26881146)x3 copy number gain See cases [RCV002286351] Chr11:230615..26881146 [GRCh37]
Chr11:11p15.5-14.2		 pathogenic
NM_001143667.2(ZBED5):c.82T>A (p.Phe28Ile) single nucleotide variant not specified [RCV004100252] Chr11:10854864 [GRCh38]
Chr11:10876411 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.39C>G (p.Phe13Leu) single nucleotide variant not specified [RCV004139056] Chr11:10854907 [GRCh38]
Chr11:10876454 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1975A>G (p.Arg659Gly) single nucleotide variant not specified [RCV004239372] Chr11:10852971 [GRCh38]
Chr11:10874518 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1520C>T (p.Ser507Leu) single nucleotide variant not specified [RCV004151284] Chr11:10853426 [GRCh38]
Chr11:10874973 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1708A>G (p.Asn570Asp) single nucleotide variant not specified [RCV004080320] Chr11:10853238 [GRCh38]
Chr11:10874785 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.517G>T (p.Asp173Tyr) single nucleotide variant not specified [RCV004246837] Chr11:10854429 [GRCh38]
Chr11:10875976 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1769G>A (p.Arg590Gln) single nucleotide variant not specified [RCV004188538] Chr11:10853177 [GRCh38]
Chr11:10874724 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1604C>G (p.Thr535Ser) single nucleotide variant not specified [RCV004170834] Chr11:10853342 [GRCh38]
Chr11:10874889 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.603T>G (p.Ser201Arg) single nucleotide variant not specified [RCV004176280] Chr11:10854343 [GRCh38]
Chr11:10875890 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.593A>G (p.Tyr198Cys) single nucleotide variant not specified [RCV004276422] Chr11:10854353 [GRCh38]
Chr11:10875900 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1473G>A (p.Met491Ile) single nucleotide variant not specified [RCV004279217] Chr11:10853473 [GRCh38]
Chr11:10875020 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1903C>T (p.Leu635Phe) single nucleotide variant not specified [RCV004279636] Chr11:10853043 [GRCh38]
Chr11:10874590 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.454C>A (p.His152Asn) single nucleotide variant not specified [RCV004274440] Chr11:10854492 [GRCh38]
Chr11:10876039 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1670G>A (p.Arg557His) single nucleotide variant not specified [RCV004258799] Chr11:10853276 [GRCh38]
Chr11:10874823 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1562A>T (p.Glu521Val) single nucleotide variant not specified [RCV004338881] Chr11:10853384 [GRCh38]
Chr11:10874931 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1985T>G (p.Leu662Arg) single nucleotide variant not specified [RCV004365004] Chr11:10852961 [GRCh38]
Chr11:10874508 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1008A>G (p.Glu336=) single nucleotide variant not provided [RCV003397927] Chr11:10853938 [GRCh38]
Chr11:10875485 [GRCh37]
Chr11:11p15.4		 likely benign
NM_001143667.2(ZBED5):c.270C>G (p.Val90=) single nucleotide variant not provided [RCV003397928] Chr11:10854676 [GRCh38]
Chr11:10876223 [GRCh37]
Chr11:11p15.4		 likely benign
NM_001143667.2(ZBED5):c.1937C>T (p.Thr646Met) single nucleotide variant not specified [RCV004478699] Chr11:10853009 [GRCh38]
Chr11:10874556 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.486C>G (p.Asp162Glu) single nucleotide variant not specified [RCV004351789] Chr11:10854460 [GRCh38]
Chr11:10876007 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1516T>A (p.Ser506Thr) single nucleotide variant not specified [RCV004478694] Chr11:10853430 [GRCh38]
Chr11:10874977 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1608A>T (p.Glu536Asp) single nucleotide variant not specified [RCV004478695] Chr11:10853338 [GRCh38]
Chr11:10874885 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1709A>G (p.Asn570Ser) single nucleotide variant not specified [RCV004478697] Chr11:10853237 [GRCh38]
Chr11:10874784 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1925A>G (p.His642Arg) single nucleotide variant not specified [RCV004478698] Chr11:10853021 [GRCh38]
Chr11:10874568 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.1973A>G (p.Tyr658Cys) single nucleotide variant not specified [RCV004478700] Chr11:10852973 [GRCh38]
Chr11:10874520 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.220C>A (p.Gln74Lys) single nucleotide variant not specified [RCV004478701] Chr11:10854726 [GRCh38]
Chr11:10876273 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.596A>G (p.Asn199Ser) single nucleotide variant not specified [RCV004478706] Chr11:10854350 [GRCh38]
Chr11:10875897 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.446T>G (p.Leu149Arg) single nucleotide variant not specified [RCV004478702] Chr11:10854500 [GRCh38]
Chr11:10876047 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.494T>G (p.Ile165Arg) single nucleotide variant not specified [RCV004478703] Chr11:10854452 [GRCh38]
Chr11:10875999 [GRCh37]
Chr11:11p15.4		 uncertain significance
NM_001143667.2(ZBED5):c.538C>A (p.Pro180Thr) single nucleotide variant not specified [RCV004478704] Chr11:10854408 [GRCh38]
Chr11:10875955 [GRCh37]
Chr11:11p15.4		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:813
Count of miRNA genes:497
Interacting mature miRNAs:535
Transcripts:ENST00000413761, ENST00000432999, ENST00000525350, ENST00000526020, ENST00000526852, ENST00000528289, ENST00000530570, ENST00000533903, ENST00000533925, ENST00000534690
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D11S2306E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371110,874,386 - 10,874,577UniSTSGRCh37
Build 361110,830,962 - 10,831,153RGDNCBI36
Celera1110,996,052 - 10,996,243RGD
Cytogenetic Map11p15.3UniSTS
HuRef1110,547,300 - 10,547,491UniSTS
RH18452  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371110,874,464 - 10,874,642UniSTSGRCh37
Build 361110,831,040 - 10,831,218RGDNCBI36
Celera1110,996,130 - 10,996,308RGD
Cytogenetic Map11p15.3UniSTS
HuRef1110,547,378 - 10,547,556UniSTS
GeneMap99-GB4 RH Map1148.79UniSTS
NCBI RH Map1130.6UniSTS
WI-14576  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371110,876,202 - 10,876,328UniSTSGRCh37
Build 361110,832,778 - 10,832,904RGDNCBI36
Celera1110,997,868 - 10,997,994RGD
Cytogenetic Map11p15.3UniSTS
HuRef1110,549,116 - 10,549,242UniSTS
GeneMap99-GB4 RH Map1148.69UniSTS
Whitehead-RH Map1148.8UniSTS
NCBI RH Map1128.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1945 1460 1093 179 1171 53 3389 973 1569 253 1338 1531 142 1 914 1966 5 2
Low 494 1487 632 444 736 411 968 1224 2165 166 122 82 33 290 822 1
Below cutoff 44 1 1 44 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001143667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC069360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ028130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA059122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA785416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB100756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000413761   ⟹   ENSP00000415939
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,852,706 - 10,858,053 (-)Ensembl
RefSeq Acc Id: ENST00000432999   ⟹   ENSP00000398106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,852,704 - 10,858,073 (-)Ensembl
RefSeq Acc Id: ENST00000525350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,812,074 - 10,856,218 (-)Ensembl
RefSeq Acc Id: ENST00000526020   ⟹   ENSP00000433093
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,854,619 - 10,858,796 (-)Ensembl
RefSeq Acc Id: ENST00000526852   ⟹   ENSP00000435663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,854,668 - 10,857,819 (-)Ensembl
RefSeq Acc Id: ENST00000528289   ⟹   ENSP00000432764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,854,767 - 10,858,065 (-)Ensembl
RefSeq Acc Id: ENST00000530570
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,855,658 - 10,858,065 (-)Ensembl
RefSeq Acc Id: ENST00000533903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,813,006 - 10,826,582 (-)Ensembl
RefSeq Acc Id: ENST00000533925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,849,897 - 10,858,073 (-)Ensembl
RefSeq Acc Id: ENST00000534690   ⟹   ENSP00000435491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1110,854,737 - 10,857,637 (-)Ensembl
RefSeq Acc Id: NM_001143667   ⟹   NP_001137139
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381110,852,706 - 10,858,053 (-)NCBI
GRCh371110,874,251 - 10,879,620 (-)RGD
Celera1110,995,917 - 11,001,286 (-)RGD
HuRef1110,547,165 - 10,552,534 (-)ENTREZGENE
CHM1_11110,873,300 - 10,878,669 (-)NCBI
T2T-CHM13v2.01110,937,686 - 10,943,033 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021211   ⟹   NP_067034
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381110,852,706 - 10,858,053 (-)NCBI
GRCh371110,874,251 - 10,879,620 (-)RGD
Celera1110,995,917 - 11,001,286 (-)RGD
HuRef1110,547,165 - 10,552,534 (-)ENTREZGENE
CHM1_11110,873,300 - 10,878,669 (-)NCBI
T2T-CHM13v2.01110,937,686 - 10,943,033 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067034   ⟸   NM_021211
- UniProtKB: Q9NT24 (UniProtKB/Swiss-Prot),   Q86WW3 (UniProtKB/Swiss-Prot),   Q05D82 (UniProtKB/Swiss-Prot),   B2RCC1 (UniProtKB/Swiss-Prot),   Q9UBJ4 (UniProtKB/Swiss-Prot),   Q49AG3 (UniProtKB/Swiss-Prot),   B3KMX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137139   ⟸   NM_001143667
- UniProtKB: Q9NT24 (UniProtKB/Swiss-Prot),   Q86WW3 (UniProtKB/Swiss-Prot),   Q05D82 (UniProtKB/Swiss-Prot),   B2RCC1 (UniProtKB/Swiss-Prot),   Q9UBJ4 (UniProtKB/Swiss-Prot),   Q49AG3 (UniProtKB/Swiss-Prot),   B3KMX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000415939   ⟸   ENST00000413761
RefSeq Acc Id: ENSP00000435491   ⟸   ENST00000534690
RefSeq Acc Id: ENSP00000398106   ⟸   ENST00000432999
RefSeq Acc Id: ENSP00000433093   ⟸   ENST00000526020
RefSeq Acc Id: ENSP00000435663   ⟸   ENST00000526852
RefSeq Acc Id: ENSP00000432764   ⟸   ENST00000528289
Protein Domains
BED-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q49AG3-F1-model_v2 AlphaFold Q49AG3 1-693 view protein structure

Promoters
RGD ID:6789625
Promoter ID:HG_KWN:12332
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000409209,   NM_001143667,   UC001MJG.1,   UC001MJK.2,   UC001MJL.1,   UC001MJM.1,   UC009YGG.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361110,835,866 - 10,836,972 (-)MPROMDB
RGD ID:7219663
Promoter ID:EPDNEW_H15577
Type:initiation region
Name:ZBED5_2
Description:zinc finger BED-type containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15578  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381110,858,036 - 10,858,096EPDNEW
RGD ID:7219665
Promoter ID:EPDNEW_H15578
Type:initiation region
Name:ZBED5_1
Description:zinc finger BED-type containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15577  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381110,858,053 - 10,858,113EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30803 AgrOrtholog
COSMIC ZBED5 COSMIC
Ensembl Genes ENSG00000236287 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000413761 ENTREZGENE
  ENST00000413761.7 UniProtKB/Swiss-Prot
  ENST00000432999 ENTREZGENE
  ENST00000432999.6 UniProtKB/Swiss-Prot
  ENST00000526020.5 UniProtKB/TrEMBL
  ENST00000526852.5 UniProtKB/TrEMBL
  ENST00000528289.5 UniProtKB/TrEMBL
  ENST00000534690.5 UniProtKB/TrEMBL
GTEx ENSG00000236287 GTEx
HGNC ID HGNC:30803 ENTREZGENE
Human Proteome Map ZBED5 Human Proteome Map
InterPro EPM2A-int_1/ZBED8-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_BED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:58486 UniProtKB/Swiss-Prot
NCBI Gene 58486 ENTREZGENE
OMIM 615251 OMIM
PANTHER EPM2A-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LOW QUALITY PROTEIN: ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 5-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-BED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA147357120 PharmGKB
PROSITE ZF_BED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Ribonuclease H-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt B2RCC1 ENTREZGENE
  B3KMX8 ENTREZGENE, UniProtKB/TrEMBL
  E9PJ57_HUMAN UniProtKB/TrEMBL
  E9PJT5_HUMAN UniProtKB/TrEMBL
  E9PM71_HUMAN UniProtKB/TrEMBL
  E9PNT1_HUMAN UniProtKB/TrEMBL
  Q05D82 ENTREZGENE
  Q49AG3 ENTREZGENE
  Q86WW3 ENTREZGENE
  Q9NT24 ENTREZGENE
  Q9UBJ4 ENTREZGENE
  ZBED5_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2RCC1 UniProtKB/Swiss-Prot
  Q05D82 UniProtKB/Swiss-Prot
  Q86WW3 UniProtKB/Swiss-Prot
  Q9NT24 UniProtKB/Swiss-Prot
  Q9UBJ4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ZBED5  zinc finger BED-type containing 5  ZBED5  zinc finger, BED-type containing 5  Symbol and/or name change 5135510 APPROVED