Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | SASS6 | Human | primary autosomal recessive microcephaly 14 | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | SASS6 | Human | primary autosomal recessive microcephaly 14 | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
3. | RGD HPO Phenotype Annotation Pipeline | RGD automated import pipeline for human HPO-to-gene-to-disease annotations |
PMID:12477932 | PMID:14654843 | PMID:15572125 | PMID:15665853 | PMID:16244668 | PMID:16710414 | PMID:17576815 | PMID:17681131 | PMID:17681132 | PMID:19503075 | PMID:19615732 | PMID:20308539 |
PMID:20360068 | PMID:21399614 | PMID:21725316 | PMID:21873635 | PMID:22020124 | PMID:22349698 | PMID:22349705 | PMID:23511974 | PMID:24107630 | PMID:24421332 | PMID:24590172 | PMID:24613305 |
PMID:24951542 | PMID:26035073 | PMID:26186194 | PMID:26422590 | PMID:26496610 | PMID:26638075 | PMID:26687479 | PMID:26999736 | PMID:27621311 | PMID:27872092 | PMID:27911707 | PMID:28514442 |
PMID:28718761 | PMID:29395067 | PMID:29568061 | PMID:29615496 | PMID:30561431 | PMID:30639237 | PMID:30787112 | PMID:31091453 | PMID:31722219 | PMID:32086376 | PMID:32296183 | PMID:32442461 |
PMID:32671379 | PMID:32814053 | PMID:32877691 | PMID:33277362 | PMID:33907854 | PMID:33961781 | PMID:34079125 | PMID:34260288 | PMID:34373451 | PMID:35256949 | PMID:35831314 | PMID:36739862 |
PMID:37827155 |
SASS6 (Homo sapiens - human) |
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Sass6 (Mus musculus - house mouse) |
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Sass6 (Rattus norvegicus - Norway rat) |
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Sass6 (Chinchilla lanigera - long-tailed chinchilla) |
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SASS6 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SASS6 (Canis lupus familiaris - dog) |
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Sass6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SASS6 (Sus scrofa - pig) |
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SASS6 (Chlorocebus sabaeus - green monkey) |
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Sass6 (Heterocephalus glaber - naked mole-rat) |
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Variants in SASS6
73 total Variants |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] | Chr1:72661709..107456880 [GRCh38] Chr1:73127392..107999502 [GRCh37] Chr1:72899980..107801025 [NCBI36] Chr1:1p31.1-13.3 |
pathogenic |
GRCh38/hg38 1p21.3-13.3(chr1:98557000-107949047)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|See cases [RCV000053878] | Chr1:98557000..107949047 [GRCh38] Chr1:99022556..108491669 [GRCh37] Chr1:98795144..108293192 [NCBI36] Chr1:1p21.3-13.3 |
pathogenic |
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 | copy number loss | See cases [RCV000053877] | Chr1:97410602..110670510 [GRCh38] Chr1:97876158..111213132 [GRCh37] Chr1:97648746..111014655 [NCBI36] Chr1:1p21.3-13.3 |
pathogenic |
NM_194292.2(SASS6):c.1623C>T (p.Phe541=) | single nucleotide variant | Malignant melanoma [RCV000063984] | Chr1:100103006 [GRCh38] Chr1:100568562 [GRCh37] Chr1:100341150 [NCBI36] Chr1:1p21.2 |
not provided |
NM_194292.3(SASS6):c.185T>C (p.Ile62Thr) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV000172831] | Chr1:100123231 [GRCh38] Chr1:100588787 [GRCh37] Chr1:1p21.2 |
pathogenic |
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 | copy number loss | See cases [RCV000135333] | Chr1:97272349..108893138 [GRCh38] Chr1:97737905..109435760 [GRCh37] Chr1:97510493..109237283 [NCBI36] Chr1:1p21.3-13.3 |
pathogenic |
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 | copy number gain | See cases [RCV000135654] | Chr1:83457325..104273917 [GRCh38] Chr1:83923008..104816539 [GRCh37] Chr1:83695596..104618062 [NCBI36] Chr1:1p31.1-21.1 |
pathogenic |
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 | copy number loss | not provided [RCV000762767] | Chr1:20608823..120546301 [GRCh37] Chr1:1p36.12-12 |
likely benign |
NM_194292.3(SASS6):c.1036G>T (p.Asp346Tyr) | single nucleotide variant | not provided [RCV000443694] | Chr1:100107830 [GRCh38] Chr1:100573386 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1571C>G (p.Thr524Ser) | single nucleotide variant | not specified [RCV000503864] | Chr1:100103058 [GRCh38] Chr1:100568614 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.86G>A (p.Ser29Asn) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003343872]|SASS6-related condition [RCV003935311]|not provided [RCV000898508]|not specified [RCV000500503] | Chr1:100125922 [GRCh38] Chr1:100591478 [GRCh37] Chr1:1p21.2 |
benign|likely benign |
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 | copy number gain | See cases [RCV000510383] | Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44 |
pathogenic |
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) | copy number gain | See cases [RCV000510926] | Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44 |
pathogenic |
NM_194292.3(SASS6):c.41T>C (p.Val14Ala) | single nucleotide variant | Inborn genetic diseases [RCV000623389] | Chr1:100132774 [GRCh38] Chr1:100598330 [GRCh37] Chr1:1p21.2 |
uncertain significance |
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 | copy number gain | See cases [RCV000512354] | Chr1:93837992..121343783 [GRCh37] Chr1:1p22.1-11.2 |
pathogenic |
NM_194292.3(SASS6):c.1186dup (p.Thr396fs) | duplication | Inborn genetic diseases [RCV000622270] | Chr1:100107513..100107514 [GRCh38] Chr1:100573069..100573070 [GRCh37] Chr1:1p21.2 |
pathogenic|likely pathogenic |
NM_194292.3(SASS6):c.1326+47G>C | single nucleotide variant | not provided [RCV001539711] | Chr1:100107327 [GRCh38] Chr1:100572883 [GRCh37] Chr1:1p21.2 |
benign |
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 | copy number gain | not provided [RCV000736295] | Chr1:47851..249228449 [GRCh37] Chr1:1p36.33-q44 |
pathogenic |
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 | copy number gain | not provided [RCV000736305] | Chr1:82154..249218992 [GRCh37] Chr1:1p36.33-q44 |
pathogenic |
GRCh37/hg19 1p21.2(chr1:100443462-100693294)x3 | copy number gain | not provided [RCV000736589] | Chr1:100443462..100693294 [GRCh37] Chr1:1p21.2 |
benign |
GRCh37/hg19 1p22.1-13.3(chr1:94054724-111671707)x3 | copy number gain | not provided [RCV000749068] | Chr1:94054724..111671707 [GRCh37] Chr1:1p22.1-13.3 |
pathogenic |
GRCh37/hg19 1p21.2(chr1:100506415-100623922)x1 | copy number loss | not provided [RCV000749075] | Chr1:100506415..100623922 [GRCh37] Chr1:1p21.2 |
benign |
GRCh37/hg19 1p21.2(chr1:100523464-100587146)x3 | copy number gain | not provided [RCV000749076] | Chr1:100523464..100587146 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1546-120G>C | single nucleotide variant | not provided [RCV001612633] | Chr1:100103203 [GRCh38] Chr1:100568759 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.206+192A>G | single nucleotide variant | not provided [RCV001613559] | Chr1:100123018 [GRCh38] Chr1:100588574 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.921T>C (p.Asp307=) | single nucleotide variant | not provided [RCV000883804] | Chr1:100107945 [GRCh38] Chr1:100573501 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1408+7A>G | single nucleotide variant | not provided [RCV000904426] | Chr1:100106905 [GRCh38] Chr1:100572461 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1921G>A (p.Ala641Thr) | single nucleotide variant | not provided [RCV000924222] | Chr1:100085381 [GRCh38] Chr1:100550937 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.779C>T (p.Ala260Val) | single nucleotide variant | not provided [RCV000893542] | Chr1:100110374 [GRCh38] Chr1:100575930 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.768G>C (p.Glu256Asp) | single nucleotide variant | not provided [RCV000906557] | Chr1:100110385 [GRCh38] Chr1:100575941 [GRCh37] Chr1:1p21.2 |
likely benign |
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 | copy number gain | Global developmental delay [RCV000787285] | Chr1:103343285..103455144 [GRCh37] Chr1:1p36.22-21.1 |
uncertain significance |
NM_194292.3(SASS6):c.1674+3A>G | single nucleotide variant | not provided [RCV000901187] | Chr1:100102952 [GRCh38] Chr1:100568508 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.768G>A (p.Glu256=) | single nucleotide variant | not provided [RCV000916595] | Chr1:100110385 [GRCh38] Chr1:100575941 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.873G>C (p.Arg291=) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003344122]|not provided [RCV000893326]|not specified [RCV001818682] | Chr1:100107993 [GRCh38] Chr1:100573549 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1057-5A>G | single nucleotide variant | not provided [RCV000897819] | Chr1:100107722 [GRCh38] Chr1:100573278 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.735A>G (p.Gln245=) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003346232]|not provided [RCV000963056]|not specified [RCV001819046] | Chr1:100110418 [GRCh38] Chr1:100575974 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1057-7A>G | single nucleotide variant | not provided [RCV000918781] | Chr1:100107724 [GRCh38] Chr1:100573280 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1935G>A (p.Ala645=) | single nucleotide variant | not provided [RCV000894102] | Chr1:100085367 [GRCh38] Chr1:100550923 [GRCh37] Chr1:1p21.2 |
benign |
NC_000001.10:g.(?_100316599)_(101709564_?)dup | duplication | Maple syrup urine disease [RCV003107553] | Chr1:100316599..101709564 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.861+232C>T | single nucleotide variant | not provided [RCV001695720] | Chr1:100110060 [GRCh38] Chr1:100575616 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1409-249A>G | single nucleotide variant | not provided [RCV001660948] | Chr1:100106152 [GRCh38] Chr1:100571708 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1545+315C>T | single nucleotide variant | not provided [RCV001639293] | Chr1:100105452 [GRCh38] Chr1:100571008 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.483+229A>G | single nucleotide variant | not provided [RCV001621382] | Chr1:100121149 [GRCh38] Chr1:100586705 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.65+7T>C | single nucleotide variant | not provided [RCV001687541] | Chr1:100132743 [GRCh38] Chr1:100598299 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.549+21T>C | single nucleotide variant | not provided [RCV001640028] | Chr1:100120373 [GRCh38] Chr1:100585929 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.862-305A>T | single nucleotide variant | not provided [RCV001595718] | Chr1:100108309 [GRCh38] Chr1:100573865 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.369A>G (p.Leu123=) | single nucleotide variant | not provided [RCV000892011] | Chr1:100121492 [GRCh38] Chr1:100587048 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.918A>G (p.Leu306=) | single nucleotide variant | not provided [RCV000975452] | Chr1:100107948 [GRCh38] Chr1:100573504 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1835G>A (p.Arg612His) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003346207]|not provided [RCV000909822]|not specified [RCV001818822] | Chr1:100085568 [GRCh38] Chr1:100551124 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1692G>A (p.Gln564=) | single nucleotide variant | not provided [RCV000979655] | Chr1:100088219 [GRCh38] Chr1:100553775 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.600G>A (p.Ala200=) | single nucleotide variant | not provided [RCV000884382] | Chr1:100119087 [GRCh38] Chr1:100584643 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1773-4T>G | single nucleotide variant | not provided [RCV000935019]|not specified [RCV001818907] | Chr1:100085634 [GRCh38] Chr1:100551190 [GRCh37] Chr1:1p21.2 |
likely benign|uncertain significance |
NM_194292.3(SASS6):c.312-4A>C | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003346209]|not provided [RCV000913978]|not specified [RCV001818847] | Chr1:100121553 [GRCh38] Chr1:100587109 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.862-9C>T | single nucleotide variant | not provided [RCV000891045] | Chr1:100108013 [GRCh38] Chr1:100573569 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1057-6_1057-2del | deletion | Inborn genetic diseases [RCV002571380]|Microcephaly 14, primary, autosomal recessive [RCV002465006] | Chr1:100107719..100107723 [GRCh38] Chr1:100573275..100573279 [GRCh37] Chr1:1p21.2 |
likely pathogenic|uncertain significance |
NM_194292.3(SASS6):c.669+258_669+259del | microsatellite | not provided [RCV001620968] | Chr1:100118759..100118760 [GRCh38] Chr1:100584315..100584316 [GRCh37] Chr1:1p21.2 |
benign |
NM_019083.3(TRMT13):c.143C>T (p.Ala48Val) | single nucleotide variant | not provided [RCV001722844] | Chr1:100133311 [GRCh38] Chr1:100598867 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1408+9G>A | single nucleotide variant | not provided [RCV001638764] | Chr1:100106903 [GRCh38] Chr1:100572459 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1674+279del | deletion | not provided [RCV001638849] | Chr1:100102676 [GRCh38] Chr1:100568232 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.312-145T>G | single nucleotide variant | not provided [RCV001719269] | Chr1:100121694 [GRCh38] Chr1:100587250 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.312-41A>G | single nucleotide variant | not provided [RCV001642019] | Chr1:100121590 [GRCh38] Chr1:100587146 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.207-86dup | duplication | not provided [RCV001677647] | Chr1:100122549..100122550 [GRCh38] Chr1:100588105..100588106 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.-69C>G | single nucleotide variant | not provided [RCV001617373] | Chr1:100132883 [GRCh38] Chr1:100598439 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.933C>T (p.His311=) | single nucleotide variant | SASS6-related condition [RCV003976095]|not provided [RCV001721798] | Chr1:100107933 [GRCh38] Chr1:100573489 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.484-117G>C | single nucleotide variant | not provided [RCV001721810] | Chr1:100120576 [GRCh38] Chr1:100586132 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.126+212del | deletion | not provided [RCV001656512] | Chr1:100125670 [GRCh38] Chr1:100591226 [GRCh37] Chr1:1p21.2 |
benign |
NM_019083.3(TRMT13):c.142G>A (p.Ala48Thr) | single nucleotide variant | not provided [RCV001617285] | Chr1:100133310 [GRCh38] Chr1:100598866 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.549+279G>A | single nucleotide variant | not provided [RCV001658730] | Chr1:100120115 [GRCh38] Chr1:100585671 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1057-37A>C | single nucleotide variant | not provided [RCV001680362] | Chr1:100107754 [GRCh38] Chr1:100573310 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.861+169A>G | single nucleotide variant | not provided [RCV001667941] | Chr1:100110123 [GRCh38] Chr1:100575679 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1674+261_1674+262dup | duplication | not provided [RCV001684494] | Chr1:100102675..100102676 [GRCh38] Chr1:100568231..100568232 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.776C>T (p.Ala259Val) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV001796680]|not provided [RCV001672294] | Chr1:100110377 [GRCh38] Chr1:100575933 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1674+261dup | duplication | not provided [RCV001681601] | Chr1:100102675..100102676 [GRCh38] Chr1:100568231..100568232 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.549+232C>T | single nucleotide variant | not provided [RCV001670024] | Chr1:100120162 [GRCh38] Chr1:100585718 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.1867+2T>A | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV001255653] | Chr1:100085534 [GRCh38] Chr1:100551090 [GRCh37] Chr1:1p21.2 |
pathogenic |
NM_194292.3(SASS6):c.127-13A>G | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV001255652] | Chr1:100123302 [GRCh38] Chr1:100588858 [GRCh37] Chr1:1p21.2 |
pathogenic|likely pathogenic |
NM_194292.3(SASS6):c.170dup (p.Leu57fs) | duplication | not provided [RCV001254968] | Chr1:100123245..100123246 [GRCh38] Chr1:100588801..100588802 [GRCh37] Chr1:1p21.2 |
likely pathogenic |
NM_194292.3(SASS6):c.1773-255T>C | single nucleotide variant | not provided [RCV001670961] | Chr1:100085885 [GRCh38] Chr1:100551441 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.550-53T>G | single nucleotide variant | not provided [RCV001694929] | Chr1:100119190 [GRCh38] Chr1:100584746 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.206+232dup | duplication | not provided [RCV001648978] | Chr1:100122970..100122971 [GRCh38] Chr1:100588526..100588527 [GRCh37] Chr1:1p21.2 |
benign |
NM_194292.3(SASS6):c.207-86_207-85dup | duplication | not provided [RCV001674387] | Chr1:100122549..100122550 [GRCh38] Chr1:100588105..100588106 [GRCh37] Chr1:1p21.2 |
benign |
GRCh37/hg19 1p21.2-21.1(chr1:100215607-105368230)x1 | copy number loss | not provided [RCV001834415] | Chr1:100215607..105368230 [GRCh37] Chr1:1p21.2-21.1 |
uncertain significance |
GRCh37/hg19 1p21.3-13.2(chr1:95046805-114714931) | copy number loss | not specified [RCV002053503] | Chr1:95046805..114714931 [GRCh37] Chr1:1p21.3-13.2 |
pathogenic |
NM_194292.3(SASS6):c.134T>A (p.Val45Asp) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV002226850] | Chr1:100123282 [GRCh38] Chr1:100588838 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.497C>A (p.Ser166Ter) | single nucleotide variant | Microcephaly 14, primary, autosomal recessive [RCV003236350] | Chr1:100120446 [GRCh38] Chr1:100586002 [GRCh37] Chr1:1p21.2 |
likely pathogenic |
NM_194292.3(SASS6):c.778G>A (p.Ala260Thr) | single nucleotide variant | Inborn genetic diseases [RCV002684114] | Chr1:100110375 [GRCh38] Chr1:100575931 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1543G>A (p.Val515Met) | single nucleotide variant | Inborn genetic diseases [RCV002685077] | Chr1:100105769 [GRCh38] Chr1:100571325 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1486C>A (p.Pro496Thr) | single nucleotide variant | Inborn genetic diseases [RCV002683387] | Chr1:100105826 [GRCh38] Chr1:100571382 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.921T>G (p.Asp307Glu) | single nucleotide variant | Inborn genetic diseases [RCV002731923] | Chr1:100107945 [GRCh38] Chr1:100573501 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.560A>G (p.Glu187Gly) | single nucleotide variant | Inborn genetic diseases [RCV002974508]|not provided [RCV003410217] | Chr1:100119127 [GRCh38] Chr1:100584683 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.1834C>T (p.Arg612Cys) | single nucleotide variant | Inborn genetic diseases [RCV002774561] | Chr1:100085569 [GRCh38] Chr1:100551125 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.862-5T>C | single nucleotide variant | Inborn genetic diseases [RCV002793391]|SASS6-related condition [RCV003946368] | Chr1:100108009 [GRCh38] Chr1:100573565 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.838G>A (p.Ala280Thr) | single nucleotide variant | Inborn genetic diseases [RCV002759742] | Chr1:100110315 [GRCh38] Chr1:100575871 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1874A>C (p.Gln625Pro) | single nucleotide variant | Inborn genetic diseases [RCV002925117] | Chr1:100085428 [GRCh38] Chr1:100550984 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.587G>A (p.Arg196Gln) | single nucleotide variant | Inborn genetic diseases [RCV003001155] | Chr1:100119100 [GRCh38] Chr1:100584656 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.350A>G (p.Asp117Gly) | single nucleotide variant | Inborn genetic diseases [RCV002965604] | Chr1:100121511 [GRCh38] Chr1:100587067 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.20A>G (p.His7Arg) | single nucleotide variant | Inborn genetic diseases [RCV002878286] | Chr1:100132795 [GRCh38] Chr1:100598351 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1667G>A (p.Gly556Glu) | single nucleotide variant | Inborn genetic diseases [RCV002719303] | Chr1:100102962 [GRCh38] Chr1:100568518 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.512T>C (p.Leu171Pro) | single nucleotide variant | Inborn genetic diseases [RCV002719431] | Chr1:100120431 [GRCh38] Chr1:100585987 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.728A>G (p.His243Arg) | single nucleotide variant | Inborn genetic diseases [RCV002719860] | Chr1:100110425 [GRCh38] Chr1:100575981 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1504A>T (p.Ser502Cys) | single nucleotide variant | Inborn genetic diseases [RCV002792175] | Chr1:100105808 [GRCh38] Chr1:100571364 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.872G>A (p.Arg291Gln) | single nucleotide variant | Inborn genetic diseases [RCV002679776] | Chr1:100107994 [GRCh38] Chr1:100573550 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.170del (p.Leu57fs) | deletion | Microcephaly 14, primary, autosomal recessive [RCV003229496] | Chr1:100123246 [GRCh38] Chr1:100588802 [GRCh37] Chr1:1p21.2 |
likely pathogenic |
NM_194292.3(SASS6):c.1783G>A (p.Val595Ile) | single nucleotide variant | Inborn genetic diseases [RCV003385681] | Chr1:100085620 [GRCh38] Chr1:100551176 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1283A>G (p.Glu428Gly) | single nucleotide variant | Inborn genetic diseases [RCV003369090] | Chr1:100107417 [GRCh38] Chr1:100572973 [GRCh37] Chr1:1p21.2 |
uncertain significance |
GRCh37/hg19 1p21.2-21.1(chr1:100146136-106580074)x1 | copy number loss | not provided [RCV003483238] | Chr1:100146136..106580074 [GRCh37] Chr1:1p21.2-21.1 |
uncertain significance |
NM_194292.3(SASS6):c.763_766del (p.Ser255_Glu256insTer) | deletion | not provided [RCV003443424] | Chr1:100110387..100110390 [GRCh38] Chr1:100575943..100575946 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.795C>T (p.Thr265=) | single nucleotide variant | SASS6-related condition [RCV003954331] | Chr1:100110358 [GRCh38] Chr1:100575914 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.213A>G (p.Lys71=) | single nucleotide variant | SASS6-related condition [RCV003966807] | Chr1:100122478 [GRCh38] Chr1:100588034 [GRCh37] Chr1:1p21.2 |
likely benign |
NM_194292.3(SASS6):c.662C>G (p.Ala221Gly) | single nucleotide variant | Inborn genetic diseases [RCV004450236] | Chr1:100119025 [GRCh38] Chr1:100584581 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.796G>A (p.Glu266Lys) | single nucleotide variant | Inborn genetic diseases [RCV004450237] | Chr1:100110357 [GRCh38] Chr1:100575913 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.586C>T (p.Arg196Trp) | single nucleotide variant | Inborn genetic diseases [RCV004450234] | Chr1:100119101 [GRCh38] Chr1:100584657 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.598G>A (p.Ala200Thr) | single nucleotide variant | Inborn genetic diseases [RCV004450235] | Chr1:100119089 [GRCh38] Chr1:100584645 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1141C>G (p.Leu381Val) | single nucleotide variant | Inborn genetic diseases [RCV004450232] | Chr1:100107633 [GRCh38] Chr1:100573189 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.1729T>G (p.Ser577Ala) | single nucleotide variant | Inborn genetic diseases [RCV004450233] | Chr1:100088182 [GRCh38] Chr1:100553738 [GRCh37] Chr1:1p21.2 |
uncertain significance |
NM_194292.3(SASS6):c.937A>G (p.Lys313Glu) | single nucleotide variant | Inborn genetic diseases [RCV004450238] | Chr1:100107929 [GRCh38] Chr1:100573485 [GRCh37] Chr1:1p21.2 |
uncertain significance |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
G63050 |
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SHGC-75217 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 119 | 9 | 38 | 30 | 676 | 34 | 235 | 45 | 103 | 56 | 475 | 213 | 7 | 2 | ||||
Low | 2315 | 2450 | 1654 | 570 | 901 | 407 | 4061 | 1977 | 3453 | 351 | 981 | 1395 | 166 | 1 | 1201 | 2731 | 3 | 1 |
Below cutoff | 4 | 529 | 34 | 23 | 373 | 23 | 60 | 175 | 175 | 12 | 4 | 4 | 1 | 3 | 57 |
RefSeq Transcripts | NG_051914 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001304829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_194292 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017000486 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_047447884 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_047447889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_047447896 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054334750 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054334751 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054334752 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054334753 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC093019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK025750 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK302513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK307824 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL445928 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL834265 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY359522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC054889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC101026 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX113339 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX641109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX648406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471097 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CP068277 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DC400869 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENST00000287482 ⟹ ENSP00000287482 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000462159 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001304829 ⟹ NP_001291758 | ||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_194292 ⟹ NP_919268 | ||||||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017000486 ⟹ XP_016855975 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_047447884 ⟹ XP_047303840 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_047447889 ⟹ XP_047303845 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_047447896 ⟹ XP_047303852 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054334750 ⟹ XP_054190725 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054334751 ⟹ XP_054190726 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054334752 ⟹ XP_054190727 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054334753 ⟹ XP_054190728 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001291758 | (Get FASTA) | NCBI Sequence Viewer |
NP_919268 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016855975 | (Get FASTA) | NCBI Sequence Viewer | |
XP_047303840 | (Get FASTA) | NCBI Sequence Viewer | |
XP_047303845 | (Get FASTA) | NCBI Sequence Viewer | |
XP_047303852 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054190725 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054190726 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054190727 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054190728 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI01027 | (Get FASTA) | NCBI Sequence Viewer |
AAQ57128 | (Get FASTA) | NCBI Sequence Viewer | |
BAG63789 | (Get FASTA) | NCBI Sequence Viewer | |
CAD38940 | (Get FASTA) | NCBI Sequence Viewer | |
EAW72974 | (Get FASTA) | NCBI Sequence Viewer | |
EAW72975 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSP00000287482 | ||
ENSP00000287482.5 | |||
GenBank Protein | Q6UVJ0 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_919268 ⟸ NM_194292 |
- Peptide Label: | isoform 1 |
- UniProtKB: | D3DT55 (UniProtKB/Swiss-Prot), Q8N3K0 (UniProtKB/Swiss-Prot), Q6UVJ0 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001291758 ⟸ NM_001304829 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q495U0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_016855975 ⟸ XM_017000486 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B4DYM7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSP00000287482 ⟸ ENST00000287482 |
RefSeq Acc Id: | XP_047303845 ⟸ XM_047447889 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_047303852 ⟸ XM_047447896 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_047303840 ⟸ XM_047447884 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054190727 ⟸ XM_054334752 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054190725 ⟸ XM_054334750 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B4DYM7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_054190728 ⟸ XM_054334753 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054190726 ⟸ XM_054334751 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6UVJ0-F1-model_v2 | AlphaFold | Q6UVJ0 | 1-657 | view protein structure |
RGD ID: | 6856352 | ||||||||
Promoter ID: | EPDNEW_H1341 | ||||||||
Type: | initiation region | ||||||||
Name: | SASS6_1 | ||||||||
Description: | SAS-6 centriolar assembly protein | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H1342 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6856354 | ||||||||
Promoter ID: | EPDNEW_H1342 | ||||||||
Type: | initiation region | ||||||||
Name: | SASS6_2 | ||||||||
Description: | SAS-6 centriolar assembly protein | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H1341 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6786824 | ||||||||
Promoter ID: | HG_KWN:3814 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | ENST00000370139, ENST00000370143, NM_019083, NM_194292, OTTHUMT00000029912, OTTHUMT00000029920, UC009WDZ.1, UC009WEA.1 | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | HGNC:25403 | AgrOrtholog |
COSMIC | SASS6 | COSMIC |
Ensembl Genes | ENSG00000156876 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENST00000287482 | ENTREZGENE |
ENST00000287482.6 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.10.287.1490 | UniProtKB/TrEMBL |
2.170.210.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GTEx | ENSG00000156876 | GTEx |
HGNC ID | HGNC:25403 | ENTREZGENE |
Human Proteome Map | SASS6 | Human Proteome Map |
InterPro | SAS-6_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SAS-6_N_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SAS6_CC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:163786 | UniProtKB/Swiss-Prot |
NCBI Gene | 163786 | ENTREZGENE |
OMIM | 609321 | OMIM |
PANTHER | SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG | UniProtKB/Swiss-Prot |
SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG | UniProtKB/Swiss-Prot | |
SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG | UniProtKB/TrEMBL | |
SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG | UniProtKB/TrEMBL | |
Pfam | SAS-6_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Sas6_CC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PharmGKB | PA142670950 | PharmGKB |
UniProt | B4DYM7 | ENTREZGENE, UniProtKB/TrEMBL |
D3DT55 | ENTREZGENE | |
Q495U0 | ENTREZGENE, UniProtKB/TrEMBL | |
Q6UVJ0 | ENTREZGENE | |
Q8N3K0 | ENTREZGENE | |
SAS6_HUMAN | UniProtKB/Swiss-Prot | |
UniProt Secondary | D3DT55 | UniProtKB/Swiss-Prot |
Q8N3K0 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2015-06-23 | SASS6 | SAS-6 centriolar assembly protein | SASS6 | spindle assembly 6 homolog (C. elegans) | Symbol and/or name change | 5135510 | APPROVED |