SASS6 (SAS-6 centriolar assembly protein) - Rat Genome Database

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Gene: SASS6 (SAS-6 centriolar assembly protein) Homo sapiens
Analyze
Symbol: SASS6
Name: SAS-6 centriolar assembly protein
RGD ID: 1603551
HGNC Page HGNC:25403
Description: Involved in centriole replication; positive regulation of G1/S transition of mitotic cell cycle; and positive regulation of centriole replication. Located in centriole; centrosome; and procentriole replication complex. Implicated in primary autosomal recessive microcephaly 14.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ22097; hsSAS-6; MCPH14; MGC119440; SAS-6; SAS6; spindle assembly 6 homolog; spindle assembly abnormal protein 6 homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,083,570 - 100,132,930 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,083,563 - 100,132,955 (-)EnsemblGRCh38hg38GRCh38
GRCh371100,549,126 - 100,598,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,321,688 - 100,371,099 (-)NCBINCBI36Build 36hg18NCBI36
Celera198,805,981 - 98,855,389 (-)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,671,854 - 98,721,264 (-)NCBIHuRef
CHM1_11100,665,439 - 100,714,865 (-)NCBICHM1_1
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:12477932   PMID:14654843   PMID:15572125   PMID:15665853   PMID:16244668   PMID:16710414   PMID:17576815   PMID:17681131   PMID:17681132   PMID:19503075   PMID:19615732   PMID:20308539  
PMID:20360068   PMID:21399614   PMID:21725316   PMID:21873635   PMID:22020124   PMID:22349698   PMID:22349705   PMID:23511974   PMID:24107630   PMID:24421332   PMID:24590172   PMID:24613305  
PMID:24951542   PMID:26035073   PMID:26186194   PMID:26422590   PMID:26496610   PMID:26638075   PMID:26687479   PMID:26999736   PMID:27621311   PMID:27872092   PMID:27911707   PMID:28514442  
PMID:28718761   PMID:29395067   PMID:29568061   PMID:29615496   PMID:30561431   PMID:30639237   PMID:30787112   PMID:31091453   PMID:31722219   PMID:32086376   PMID:32296183   PMID:32442461  
PMID:32671379   PMID:32814053   PMID:32877691   PMID:33277362   PMID:33907854   PMID:33961781   PMID:34079125   PMID:34260288   PMID:34373451   PMID:35256949   PMID:35831314   PMID:36739862  
PMID:37827155  


Genomics

Comparative Map Data
SASS6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,083,570 - 100,132,930 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,083,563 - 100,132,955 (-)EnsemblGRCh38hg38GRCh38
GRCh371100,549,126 - 100,598,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,321,688 - 100,371,099 (-)NCBINCBI36Build 36hg18NCBI36
Celera198,805,981 - 98,855,389 (-)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,671,854 - 98,721,264 (-)NCBIHuRef
CHM1_11100,665,439 - 100,714,865 (-)NCBICHM1_1
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBIT2T-CHM13v2.0
Sass6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,388,577 - 116,424,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,388,631 - 116,424,653 (+)EnsemblGRCm39 Ensembl
GRCm383116,594,938 - 116,630,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,594,982 - 116,631,004 (+)EnsemblGRCm38mm10GRCm38
MGSCv373116,297,926 - 116,333,902 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,587,012 - 116,621,151 (+)NCBIMGSCv36mm8
Celera3123,022,163 - 123,057,932 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.4NCBI
Sass6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,231,896 - 207,263,840 (+)NCBIGRCr8
mRatBN7.22204,546,660 - 204,578,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,546,660 - 204,578,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2212,203,668 - 212,227,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,112,851 - 210,136,947 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,929,924 - 204,954,021 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,626,851 - 219,660,975 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,628,695 - 219,652,968 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,557,441 - 237,588,679 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,825,474 - 212,849,747 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,788,526 - 212,818,898 (+)NCBI
Celera2197,038,483 - 197,062,724 (+)NCBICelera
Cytogenetic Map2q42NCBI
Sass6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554354,832,284 - 4,879,010 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554354,832,284 - 4,876,077 (-)NCBIChiLan1.0ChiLan1.0
SASS6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,894,888 - 126,944,006 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11126,052,966 - 126,102,037 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,741,808 - 102,790,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,457,559 - 101,506,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,459,348 - 101,506,072 (-)Ensemblpanpan1.1panPan2
SASS6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,859,597 - 49,902,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,859,182 - 49,900,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,532,393 - 52,575,607 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0650,209,089 - 50,252,236 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,209,170 - 50,252,236 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,900,764 - 49,943,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,879,765 - 49,922,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,311,435 - 50,354,653 (+)NCBIUU_Cfam_GSD_1.0
Sass6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,442,855 - 110,484,777 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748249,934 - 289,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748249,216 - 290,062 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SASS6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,985,759 - 118,050,040 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,985,599 - 118,049,129 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SASS6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,205,538 - 33,254,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2033,205,742 - 33,257,170 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603824,802,894 - 24,852,018 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sass6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248572,882,133 - 2,930,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248572,872,335 - 2,930,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SASS6
73 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] Chr1:72661709..107456880 [GRCh38]
Chr1:73127392..107999502 [GRCh37]
Chr1:72899980..107801025 [NCBI36]
Chr1:1p31.1-13.3
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:98557000-107949047)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|See cases [RCV000053878] Chr1:98557000..107949047 [GRCh38]
Chr1:99022556..108491669 [GRCh37]
Chr1:98795144..108293192 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
NM_194292.2(SASS6):c.1623C>T (p.Phe541=) single nucleotide variant Malignant melanoma [RCV000063984] Chr1:100103006 [GRCh38]
Chr1:100568562 [GRCh37]
Chr1:100341150 [NCBI36]
Chr1:1p21.2
not provided
NM_194292.3(SASS6):c.185T>C (p.Ile62Thr) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV000172831] Chr1:100123231 [GRCh38]
Chr1:100588787 [GRCh37]
Chr1:1p21.2
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 copy number gain See cases [RCV000135654] Chr1:83457325..104273917 [GRCh38]
Chr1:83923008..104816539 [GRCh37]
Chr1:83695596..104618062 [NCBI36]
Chr1:1p31.1-21.1
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
NM_194292.3(SASS6):c.1036G>T (p.Asp346Tyr) single nucleotide variant not provided [RCV000443694] Chr1:100107830 [GRCh38]
Chr1:100573386 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1571C>G (p.Thr524Ser) single nucleotide variant not specified [RCV000503864] Chr1:100103058 [GRCh38]
Chr1:100568614 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.86G>A (p.Ser29Asn) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003343872]|SASS6-related condition [RCV003935311]|not provided [RCV000898508]|not specified [RCV000500503] Chr1:100125922 [GRCh38]
Chr1:100591478 [GRCh37]
Chr1:1p21.2
benign|likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_194292.3(SASS6):c.41T>C (p.Val14Ala) single nucleotide variant Inborn genetic diseases [RCV000623389] Chr1:100132774 [GRCh38]
Chr1:100598330 [GRCh37]
Chr1:1p21.2
uncertain significance
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 copy number gain See cases [RCV000512354] Chr1:93837992..121343783 [GRCh37]
Chr1:1p22.1-11.2
pathogenic
NM_194292.3(SASS6):c.1186dup (p.Thr396fs) duplication Inborn genetic diseases [RCV000622270] Chr1:100107513..100107514 [GRCh38]
Chr1:100573069..100573070 [GRCh37]
Chr1:1p21.2
pathogenic|likely pathogenic
NM_194292.3(SASS6):c.1326+47G>C single nucleotide variant not provided [RCV001539711] Chr1:100107327 [GRCh38]
Chr1:100572883 [GRCh37]
Chr1:1p21.2
benign
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p21.2(chr1:100443462-100693294)x3 copy number gain not provided [RCV000736589] Chr1:100443462..100693294 [GRCh37]
Chr1:1p21.2
benign
GRCh37/hg19 1p22.1-13.3(chr1:94054724-111671707)x3 copy number gain not provided [RCV000749068] Chr1:94054724..111671707 [GRCh37]
Chr1:1p22.1-13.3
pathogenic
GRCh37/hg19 1p21.2(chr1:100506415-100623922)x1 copy number loss not provided [RCV000749075] Chr1:100506415..100623922 [GRCh37]
Chr1:1p21.2
benign
GRCh37/hg19 1p21.2(chr1:100523464-100587146)x3 copy number gain not provided [RCV000749076] Chr1:100523464..100587146 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1546-120G>C single nucleotide variant not provided [RCV001612633] Chr1:100103203 [GRCh38]
Chr1:100568759 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.206+192A>G single nucleotide variant not provided [RCV001613559] Chr1:100123018 [GRCh38]
Chr1:100588574 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.921T>C (p.Asp307=) single nucleotide variant not provided [RCV000883804] Chr1:100107945 [GRCh38]
Chr1:100573501 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1408+7A>G single nucleotide variant not provided [RCV000904426] Chr1:100106905 [GRCh38]
Chr1:100572461 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1921G>A (p.Ala641Thr) single nucleotide variant not provided [RCV000924222] Chr1:100085381 [GRCh38]
Chr1:100550937 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.779C>T (p.Ala260Val) single nucleotide variant not provided [RCV000893542] Chr1:100110374 [GRCh38]
Chr1:100575930 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.768G>C (p.Glu256Asp) single nucleotide variant not provided [RCV000906557] Chr1:100110385 [GRCh38]
Chr1:100575941 [GRCh37]
Chr1:1p21.2
likely benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
NM_194292.3(SASS6):c.1674+3A>G single nucleotide variant not provided [RCV000901187] Chr1:100102952 [GRCh38]
Chr1:100568508 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.768G>A (p.Glu256=) single nucleotide variant not provided [RCV000916595] Chr1:100110385 [GRCh38]
Chr1:100575941 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.873G>C (p.Arg291=) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003344122]|not provided [RCV000893326]|not specified [RCV001818682] Chr1:100107993 [GRCh38]
Chr1:100573549 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1057-5A>G single nucleotide variant not provided [RCV000897819] Chr1:100107722 [GRCh38]
Chr1:100573278 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.735A>G (p.Gln245=) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003346232]|not provided [RCV000963056]|not specified [RCV001819046] Chr1:100110418 [GRCh38]
Chr1:100575974 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1057-7A>G single nucleotide variant not provided [RCV000918781] Chr1:100107724 [GRCh38]
Chr1:100573280 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1935G>A (p.Ala645=) single nucleotide variant not provided [RCV000894102] Chr1:100085367 [GRCh38]
Chr1:100550923 [GRCh37]
Chr1:1p21.2
benign
NC_000001.10:g.(?_100316599)_(101709564_?)dup duplication Maple syrup urine disease [RCV003107553] Chr1:100316599..101709564 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.861+232C>T single nucleotide variant not provided [RCV001695720] Chr1:100110060 [GRCh38]
Chr1:100575616 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1409-249A>G single nucleotide variant not provided [RCV001660948] Chr1:100106152 [GRCh38]
Chr1:100571708 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1545+315C>T single nucleotide variant not provided [RCV001639293] Chr1:100105452 [GRCh38]
Chr1:100571008 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.483+229A>G single nucleotide variant not provided [RCV001621382] Chr1:100121149 [GRCh38]
Chr1:100586705 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.65+7T>C single nucleotide variant not provided [RCV001687541] Chr1:100132743 [GRCh38]
Chr1:100598299 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.549+21T>C single nucleotide variant not provided [RCV001640028] Chr1:100120373 [GRCh38]
Chr1:100585929 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.862-305A>T single nucleotide variant not provided [RCV001595718] Chr1:100108309 [GRCh38]
Chr1:100573865 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.369A>G (p.Leu123=) single nucleotide variant not provided [RCV000892011] Chr1:100121492 [GRCh38]
Chr1:100587048 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.918A>G (p.Leu306=) single nucleotide variant not provided [RCV000975452] Chr1:100107948 [GRCh38]
Chr1:100573504 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1835G>A (p.Arg612His) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003346207]|not provided [RCV000909822]|not specified [RCV001818822] Chr1:100085568 [GRCh38]
Chr1:100551124 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1692G>A (p.Gln564=) single nucleotide variant not provided [RCV000979655] Chr1:100088219 [GRCh38]
Chr1:100553775 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.600G>A (p.Ala200=) single nucleotide variant not provided [RCV000884382] Chr1:100119087 [GRCh38]
Chr1:100584643 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1773-4T>G single nucleotide variant not provided [RCV000935019]|not specified [RCV001818907] Chr1:100085634 [GRCh38]
Chr1:100551190 [GRCh37]
Chr1:1p21.2
likely benign|uncertain significance
NM_194292.3(SASS6):c.312-4A>C single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003346209]|not provided [RCV000913978]|not specified [RCV001818847] Chr1:100121553 [GRCh38]
Chr1:100587109 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.862-9C>T single nucleotide variant not provided [RCV000891045] Chr1:100108013 [GRCh38]
Chr1:100573569 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1057-6_1057-2del deletion Inborn genetic diseases [RCV002571380]|Microcephaly 14, primary, autosomal recessive [RCV002465006] Chr1:100107719..100107723 [GRCh38]
Chr1:100573275..100573279 [GRCh37]
Chr1:1p21.2
likely pathogenic|uncertain significance
NM_194292.3(SASS6):c.669+258_669+259del microsatellite not provided [RCV001620968] Chr1:100118759..100118760 [GRCh38]
Chr1:100584315..100584316 [GRCh37]
Chr1:1p21.2
benign
NM_019083.3(TRMT13):c.143C>T (p.Ala48Val) single nucleotide variant not provided [RCV001722844] Chr1:100133311 [GRCh38]
Chr1:100598867 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1408+9G>A single nucleotide variant not provided [RCV001638764] Chr1:100106903 [GRCh38]
Chr1:100572459 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1674+279del deletion not provided [RCV001638849] Chr1:100102676 [GRCh38]
Chr1:100568232 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.312-145T>G single nucleotide variant not provided [RCV001719269] Chr1:100121694 [GRCh38]
Chr1:100587250 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.312-41A>G single nucleotide variant not provided [RCV001642019] Chr1:100121590 [GRCh38]
Chr1:100587146 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.207-86dup duplication not provided [RCV001677647] Chr1:100122549..100122550 [GRCh38]
Chr1:100588105..100588106 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.-69C>G single nucleotide variant not provided [RCV001617373] Chr1:100132883 [GRCh38]
Chr1:100598439 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.933C>T (p.His311=) single nucleotide variant SASS6-related condition [RCV003976095]|not provided [RCV001721798] Chr1:100107933 [GRCh38]
Chr1:100573489 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.484-117G>C single nucleotide variant not provided [RCV001721810] Chr1:100120576 [GRCh38]
Chr1:100586132 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.126+212del deletion not provided [RCV001656512] Chr1:100125670 [GRCh38]
Chr1:100591226 [GRCh37]
Chr1:1p21.2
benign
NM_019083.3(TRMT13):c.142G>A (p.Ala48Thr) single nucleotide variant not provided [RCV001617285] Chr1:100133310 [GRCh38]
Chr1:100598866 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.549+279G>A single nucleotide variant not provided [RCV001658730] Chr1:100120115 [GRCh38]
Chr1:100585671 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1057-37A>C single nucleotide variant not provided [RCV001680362] Chr1:100107754 [GRCh38]
Chr1:100573310 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.861+169A>G single nucleotide variant not provided [RCV001667941] Chr1:100110123 [GRCh38]
Chr1:100575679 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1674+261_1674+262dup duplication not provided [RCV001684494] Chr1:100102675..100102676 [GRCh38]
Chr1:100568231..100568232 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.776C>T (p.Ala259Val) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV001796680]|not provided [RCV001672294] Chr1:100110377 [GRCh38]
Chr1:100575933 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1674+261dup duplication not provided [RCV001681601] Chr1:100102675..100102676 [GRCh38]
Chr1:100568231..100568232 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.549+232C>T single nucleotide variant not provided [RCV001670024] Chr1:100120162 [GRCh38]
Chr1:100585718 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.1867+2T>A single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV001255653] Chr1:100085534 [GRCh38]
Chr1:100551090 [GRCh37]
Chr1:1p21.2
pathogenic
NM_194292.3(SASS6):c.127-13A>G single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV001255652] Chr1:100123302 [GRCh38]
Chr1:100588858 [GRCh37]
Chr1:1p21.2
pathogenic|likely pathogenic
NM_194292.3(SASS6):c.170dup (p.Leu57fs) duplication not provided [RCV001254968] Chr1:100123245..100123246 [GRCh38]
Chr1:100588801..100588802 [GRCh37]
Chr1:1p21.2
likely pathogenic
NM_194292.3(SASS6):c.1773-255T>C single nucleotide variant not provided [RCV001670961] Chr1:100085885 [GRCh38]
Chr1:100551441 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.550-53T>G single nucleotide variant not provided [RCV001694929] Chr1:100119190 [GRCh38]
Chr1:100584746 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.206+232dup duplication not provided [RCV001648978] Chr1:100122970..100122971 [GRCh38]
Chr1:100588526..100588527 [GRCh37]
Chr1:1p21.2
benign
NM_194292.3(SASS6):c.207-86_207-85dup duplication not provided [RCV001674387] Chr1:100122549..100122550 [GRCh38]
Chr1:100588105..100588106 [GRCh37]
Chr1:1p21.2
benign
GRCh37/hg19 1p21.2-21.1(chr1:100215607-105368230)x1 copy number loss not provided [RCV001834415] Chr1:100215607..105368230 [GRCh37]
Chr1:1p21.2-21.1
uncertain significance
GRCh37/hg19 1p21.3-13.2(chr1:95046805-114714931) copy number loss not specified [RCV002053503] Chr1:95046805..114714931 [GRCh37]
Chr1:1p21.3-13.2
pathogenic
NM_194292.3(SASS6):c.134T>A (p.Val45Asp) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV002226850] Chr1:100123282 [GRCh38]
Chr1:100588838 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.497C>A (p.Ser166Ter) single nucleotide variant Microcephaly 14, primary, autosomal recessive [RCV003236350] Chr1:100120446 [GRCh38]
Chr1:100586002 [GRCh37]
Chr1:1p21.2
likely pathogenic
NM_194292.3(SASS6):c.778G>A (p.Ala260Thr) single nucleotide variant Inborn genetic diseases [RCV002684114] Chr1:100110375 [GRCh38]
Chr1:100575931 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1543G>A (p.Val515Met) single nucleotide variant Inborn genetic diseases [RCV002685077] Chr1:100105769 [GRCh38]
Chr1:100571325 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1486C>A (p.Pro496Thr) single nucleotide variant Inborn genetic diseases [RCV002683387] Chr1:100105826 [GRCh38]
Chr1:100571382 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.921T>G (p.Asp307Glu) single nucleotide variant Inborn genetic diseases [RCV002731923] Chr1:100107945 [GRCh38]
Chr1:100573501 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.560A>G (p.Glu187Gly) single nucleotide variant Inborn genetic diseases [RCV002974508]|not provided [RCV003410217] Chr1:100119127 [GRCh38]
Chr1:100584683 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.1834C>T (p.Arg612Cys) single nucleotide variant Inborn genetic diseases [RCV002774561] Chr1:100085569 [GRCh38]
Chr1:100551125 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.862-5T>C single nucleotide variant Inborn genetic diseases [RCV002793391]|SASS6-related condition [RCV003946368] Chr1:100108009 [GRCh38]
Chr1:100573565 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.838G>A (p.Ala280Thr) single nucleotide variant Inborn genetic diseases [RCV002759742] Chr1:100110315 [GRCh38]
Chr1:100575871 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1874A>C (p.Gln625Pro) single nucleotide variant Inborn genetic diseases [RCV002925117] Chr1:100085428 [GRCh38]
Chr1:100550984 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.587G>A (p.Arg196Gln) single nucleotide variant Inborn genetic diseases [RCV003001155] Chr1:100119100 [GRCh38]
Chr1:100584656 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.350A>G (p.Asp117Gly) single nucleotide variant Inborn genetic diseases [RCV002965604] Chr1:100121511 [GRCh38]
Chr1:100587067 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.20A>G (p.His7Arg) single nucleotide variant Inborn genetic diseases [RCV002878286] Chr1:100132795 [GRCh38]
Chr1:100598351 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1667G>A (p.Gly556Glu) single nucleotide variant Inborn genetic diseases [RCV002719303] Chr1:100102962 [GRCh38]
Chr1:100568518 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.512T>C (p.Leu171Pro) single nucleotide variant Inborn genetic diseases [RCV002719431] Chr1:100120431 [GRCh38]
Chr1:100585987 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.728A>G (p.His243Arg) single nucleotide variant Inborn genetic diseases [RCV002719860] Chr1:100110425 [GRCh38]
Chr1:100575981 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1504A>T (p.Ser502Cys) single nucleotide variant Inborn genetic diseases [RCV002792175] Chr1:100105808 [GRCh38]
Chr1:100571364 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.872G>A (p.Arg291Gln) single nucleotide variant Inborn genetic diseases [RCV002679776] Chr1:100107994 [GRCh38]
Chr1:100573550 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.170del (p.Leu57fs) deletion Microcephaly 14, primary, autosomal recessive [RCV003229496] Chr1:100123246 [GRCh38]
Chr1:100588802 [GRCh37]
Chr1:1p21.2
likely pathogenic
NM_194292.3(SASS6):c.1783G>A (p.Val595Ile) single nucleotide variant Inborn genetic diseases [RCV003385681] Chr1:100085620 [GRCh38]
Chr1:100551176 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1283A>G (p.Glu428Gly) single nucleotide variant Inborn genetic diseases [RCV003369090] Chr1:100107417 [GRCh38]
Chr1:100572973 [GRCh37]
Chr1:1p21.2
uncertain significance
GRCh37/hg19 1p21.2-21.1(chr1:100146136-106580074)x1 copy number loss not provided [RCV003483238] Chr1:100146136..106580074 [GRCh37]
Chr1:1p21.2-21.1
uncertain significance
NM_194292.3(SASS6):c.763_766del (p.Ser255_Glu256insTer) deletion not provided [RCV003443424] Chr1:100110387..100110390 [GRCh38]
Chr1:100575943..100575946 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.795C>T (p.Thr265=) single nucleotide variant SASS6-related condition [RCV003954331] Chr1:100110358 [GRCh38]
Chr1:100575914 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.213A>G (p.Lys71=) single nucleotide variant SASS6-related condition [RCV003966807] Chr1:100122478 [GRCh38]
Chr1:100588034 [GRCh37]
Chr1:1p21.2
likely benign
NM_194292.3(SASS6):c.662C>G (p.Ala221Gly) single nucleotide variant Inborn genetic diseases [RCV004450236] Chr1:100119025 [GRCh38]
Chr1:100584581 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.796G>A (p.Glu266Lys) single nucleotide variant Inborn genetic diseases [RCV004450237] Chr1:100110357 [GRCh38]
Chr1:100575913 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.586C>T (p.Arg196Trp) single nucleotide variant Inborn genetic diseases [RCV004450234] Chr1:100119101 [GRCh38]
Chr1:100584657 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.598G>A (p.Ala200Thr) single nucleotide variant Inborn genetic diseases [RCV004450235] Chr1:100119089 [GRCh38]
Chr1:100584645 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1141C>G (p.Leu381Val) single nucleotide variant Inborn genetic diseases [RCV004450232] Chr1:100107633 [GRCh38]
Chr1:100573189 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.1729T>G (p.Ser577Ala) single nucleotide variant Inborn genetic diseases [RCV004450233] Chr1:100088182 [GRCh38]
Chr1:100553738 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_194292.3(SASS6):c.937A>G (p.Lys313Glu) single nucleotide variant Inborn genetic diseases [RCV004450238] Chr1:100107929 [GRCh38]
Chr1:100573485 [GRCh37]
Chr1:1p21.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:735
Count of miRNA genes:436
Interacting mature miRNAs:485
Transcripts:ENST00000287482, ENST00000462159, ENST00000535161
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G63050  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371100,595,161 - 100,595,441UniSTSGRCh37
Build 361100,367,749 - 100,368,029RGDNCBI36
Celera198,852,038 - 98,852,318RGD
Cytogenetic Map1p21.2UniSTS
HuRef198,717,913 - 98,718,193UniSTS
TNG Radiation Hybrid Map154954.0UniSTS
SHGC-75217  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371100,548,789 - 100,548,863UniSTSGRCh37
Build 361100,321,377 - 100,321,451RGDNCBI36
Celera198,805,670 - 98,805,744RGD
Cytogenetic Map1p21.2UniSTS
HuRef198,671,543 - 98,671,617UniSTS
TNG Radiation Hybrid Map155011.0UniSTS
GeneMap99-GB4 RH Map1292.7UniSTS
Whitehead-RH Map1304.9UniSTS
NCBI RH Map1679.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 119 9 38 30 676 34 235 45 103 56 475 213 7 2
Low 2315 2450 1654 570 901 407 4061 1977 3453 351 981 1395 166 1 1201 2731 3 1
Below cutoff 4 529 34 23 373 23 60 175 175 12 4 4 1 3 57

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_051914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_194292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047447884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047447889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047447896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL445928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY359522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX113339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX641109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC400869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000287482   ⟹   ENSP00000287482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1100,083,570 - 100,132,930 (-)Ensembl
RefSeq Acc Id: ENST00000462159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1100,083,563 - 100,132,955 (-)Ensembl
RefSeq Acc Id: NM_001304829   ⟹   NP_001291758
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,132,930 (-)NCBI
CHM1_11100,665,439 - 100,715,005 (-)NCBI
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBI
Sequence:
RefSeq Acc Id: NM_194292   ⟹   NP_919268
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,132,930 (-)NCBI
GRCh371100,549,100 - 100,598,518 (-)NCBI
Build 361100,321,688 - 100,371,099 (-)NCBI Archive
Celera198,805,981 - 98,855,389 (-)RGD
HuRef198,671,854 - 98,721,264 (-)ENTREZGENE
CHM1_11100,665,439 - 100,715,005 (-)NCBI
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017000486   ⟹   XP_016855975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,126,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047447884   ⟹   XP_047303840
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,126,666 (-)NCBI
RefSeq Acc Id: XM_047447889   ⟹   XP_047303845
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,132,930 (-)NCBI
RefSeq Acc Id: XM_047447896   ⟹   XP_047303852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,083,570 - 100,126,666 (-)NCBI
RefSeq Acc Id: XM_054334750   ⟹   XP_054190725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0199,931,689 - 99,974,879 (-)NCBI
RefSeq Acc Id: XM_054334751   ⟹   XP_054190726
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0199,931,689 - 99,974,782 (-)NCBI
RefSeq Acc Id: XM_054334752   ⟹   XP_054190727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBI
RefSeq Acc Id: XM_054334753   ⟹   XP_054190728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0199,931,689 - 99,974,782 (-)NCBI
RefSeq Acc Id: NP_919268   ⟸   NM_194292
- Peptide Label: isoform 1
- UniProtKB: D3DT55 (UniProtKB/Swiss-Prot),   Q8N3K0 (UniProtKB/Swiss-Prot),   Q6UVJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001291758   ⟸   NM_001304829
- Peptide Label: isoform 2
- UniProtKB: Q495U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016855975   ⟸   XM_017000486
- Peptide Label: isoform X1
- UniProtKB: B4DYM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000287482   ⟸   ENST00000287482
RefSeq Acc Id: XP_047303845   ⟸   XM_047447889
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047303852   ⟸   XM_047447896
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047303840   ⟸   XM_047447884
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054190727   ⟸   XM_054334752
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054190725   ⟸   XM_054334750
- Peptide Label: isoform X1
- UniProtKB: B4DYM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054190728   ⟸   XM_054334753
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054190726   ⟸   XM_054334751
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6UVJ0-F1-model_v2 AlphaFold Q6UVJ0 1-657 view protein structure

Promoters
RGD ID:6856352
Promoter ID:EPDNEW_H1341
Type:initiation region
Name:SASS6_1
Description:SAS-6 centriolar assembly protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1342  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,132,930 - 100,132,990EPDNEW
RGD ID:6856354
Promoter ID:EPDNEW_H1342
Type:initiation region
Name:SASS6_2
Description:SAS-6 centriolar assembly protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1341  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,133,088 - 100,133,148EPDNEW
RGD ID:6786824
Promoter ID:HG_KWN:3814
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000370139,   ENST00000370143,   NM_019083,   NM_194292,   OTTHUMT00000029912,   OTTHUMT00000029920,   UC009WDZ.1,   UC009WEA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361100,370,961 - 100,371,461 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25403 AgrOrtholog
COSMIC SASS6 COSMIC
Ensembl Genes ENSG00000156876 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000287482 ENTREZGENE
  ENST00000287482.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  2.170.210.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000156876 GTEx
HGNC ID HGNC:25403 ENTREZGENE
Human Proteome Map SASS6 Human Proteome Map
InterPro SAS-6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAS-6_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAS6_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:163786 UniProtKB/Swiss-Prot
NCBI Gene 163786 ENTREZGENE
OMIM 609321 OMIM
PANTHER SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/Swiss-Prot
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/Swiss-Prot
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/TrEMBL
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/TrEMBL
Pfam SAS-6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sas6_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142670950 PharmGKB
UniProt B4DYM7 ENTREZGENE, UniProtKB/TrEMBL
  D3DT55 ENTREZGENE
  Q495U0 ENTREZGENE, UniProtKB/TrEMBL
  Q6UVJ0 ENTREZGENE
  Q8N3K0 ENTREZGENE
  SAS6_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary D3DT55 UniProtKB/Swiss-Prot
  Q8N3K0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-23 SASS6  SAS-6 centriolar assembly protein  SASS6  spindle assembly 6 homolog (C. elegans)  Symbol and/or name change 5135510 APPROVED