NUDT16L2P (nudix hydrolase 16 like 2, pseudogene) - Rat Genome Database

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Gene: NUDT16L2P (nudix hydrolase 16 like 2, pseudogene) Homo sapiens
Analyze
Symbol: NUDT16L2P
Name: nudix hydrolase 16 like 2, pseudogene
RGD ID: 1603358
HGNC Page HGNC:27189
Description: INTERACTS WITH aflatoxin B1; antirheumatic drug; benzo[a]pyrene
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FLJ20525; nudix hydrolase 16 pseudogene 1; NUDT16P; NUDT16P1
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: NUDT16  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,361,845 - 131,365,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,818 - 131,365,133 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,930 - 131,363,564 (+)EnsemblGRCh38hg38GRCh38
GRCh373131,080,689 - 131,083,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,563,428 - 132,566,656 (+)NCBINCBI36Build 36hg18NCBI36
Celera3129,506,361 - 129,509,638 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,465,504 - 128,468,781 (+)NCBIHuRef
CHM1_13131,044,278 - 131,047,555 (+)NCBICHM1_1
T2T-CHM13v2.03134,105,634 - 134,108,911 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16344560   PMID:21832049   PMID:31091453   PMID:33961781  


Genomics

Comparative Map Data
NUDT16L2P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,361,845 - 131,365,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,818 - 131,365,133 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,930 - 131,363,564 (+)EnsemblGRCh38hg38GRCh38
GRCh373131,080,689 - 131,083,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,563,428 - 132,566,656 (+)NCBINCBI36Build 36hg18NCBI36
Celera3129,506,361 - 129,509,638 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,465,504 - 128,468,781 (+)NCBIHuRef
CHM1_13131,044,278 - 131,047,555 (+)NCBICHM1_1
T2T-CHM13v2.03134,105,634 - 134,108,911 (+)NCBIT2T-CHM13v2.0
Nudt16l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,020,543 - 105,022,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,020,541 - 105,022,291 (-)EnsemblGRCm39 Ensembl
GRCm389105,143,344 - 105,145,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,143,342 - 105,145,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,045,674 - 105,047,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369105,001,444 - 105,003,182 (-)NCBIMGSCv36mm8
Celera9104,729,244 - 104,730,978 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Nudt16l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,633,615 - 114,635,346 (-)NCBIGRCr8
mRatBN7.28105,754,821 - 105,756,548 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,754,844 - 105,756,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,406,352 - 111,408,025 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,605,606 - 109,607,279 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,448,286 - 107,449,959 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,687,983 - 113,689,657 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,687,975 - 113,689,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,074,156 - 113,075,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,214,707 - 110,216,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8105,111,211 - 105,112,885 (-)NCBICelera
Cytogenetic Map8q32NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:216
Interacting mature miRNAs:225
Transcripts:ENST00000498923, ENST00000499077, ENST00000513809
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH92218  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,082,224 - 131,082,349UniSTSGRCh37
Build 363132,564,914 - 132,565,039RGDNCBI36
Celera3129,507,896 - 129,508,021RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,467,039 - 128,467,164UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
SHGC-77345  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,102,328 - 131,102,452UniSTSGRCh37
GRCh373131,082,492 - 131,082,617UniSTSGRCh37
Build 363132,565,182 - 132,565,307RGDNCBI36
Celera3129,508,164 - 129,508,289RGD
Celera3129,528,000 - 129,528,124UniSTS
Cytogenetic Map3q22.1UniSTS
HuRef3128,487,146 - 128,487,270UniSTS
TNG Radiation Hybrid Map375501.0UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 345 143 667 62 436 66 179 4 35 121 187 767 1 11
Low 2048 2636 1026 539 1185 376 3614 1641 2596 291 1232 776 170 1 1191 2325 5 2
Below cutoff 36 208 15 10 191 10 503 510 1044 4 18 34 1 13 450 1

Sequence


RefSeq Acc Id: ENST00000498923
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,361,818 - 131,365,122 (+)Ensembl
RefSeq Acc Id: ENST00000499077
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,361,852 - 131,365,122 (+)Ensembl
RefSeq Acc Id: ENST00000513809
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,361,930 - 131,363,564 (+)Ensembl
RefSeq Acc Id: ENST00000691745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,361,858 - 131,365,133 (+)Ensembl
RefSeq Acc Id: ENST00000692704
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,361,863 - 131,364,531 (+)Ensembl
RefSeq Acc Id: NR_002949
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,361,845 - 131,365,122 (+)NCBI
GRCh373131,080,689 - 131,083,966 (+)RGD
Build 363132,563,428 - 132,566,656 (+)NCBI Archive
Celera3129,506,361 - 129,509,638 (+)RGD
HuRef3128,465,504 - 128,468,781 (+)ENTREZGENE
CHM1_13131,044,278 - 131,047,555 (+)NCBI
T2T-CHM13v2.03134,105,634 - 134,108,911 (+)NCBI
Sequence:
RefSeq Acc Id: NR_027766
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,361,874 - 131,365,122 (+)NCBI
GRCh373131,080,689 - 131,083,966 (+)RGD
Celera3129,506,361 - 129,509,638 (+)RGD
HuRef3128,465,504 - 128,468,781 (+)ENTREZGENE
CHM1_13131,044,307 - 131,047,555 (+)NCBI
T2T-CHM13v2.03134,105,663 - 134,108,911 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG59631 (Get FASTA)   NCBI Sequence Viewer  
  EAW79211 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:6801381
Promoter ID:HG_KWN:46219
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:ENST00000383365,   UC003EOD.1,   UC003EOE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363132,563,036 - 132,563,562 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:27189 AgrOrtholog
COSMIC NUDT16L2P COSMIC
Ensembl Genes ENSG00000246082 Ensembl
  ENSG00000293492 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000498923 ENTREZGENE
  ENST00000499077 ENTREZGENE
GTEx ENSG00000246082 GTEx
  ENSG00000293492 GTEx
HGNC ID HGNC:27189 ENTREZGENE
Human Proteome Map NUDT16L2P Human Proteome Map
NCBI Gene 152195 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-17 NUDT16L2P  nudix hydrolase 16 like 2, pseudogene  NUDT16P1  nudix hydrolase 16 pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL
2015-12-08 NUDT16P1  nudix hydrolase 16 pseudogene 1    nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 NUDT16P1  nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1  NUDT16P  nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene  Symbol and/or name change 5135510 APPROVED