METTL25B (methyltransferase like 25B) - Rat Genome Database

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Gene: METTL25B (methyltransferase like 25B) Homo sapiens
Analyze
Symbol: METTL25B
Name: methyltransferase like 25B
RGD ID: 1603041
HGNC Page HGNC:24273
Description: Predicted to enable rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C1orf66; CGI-41; hypothetical protein LOC51093; methyltransferase-like protein 25B; ribosomal RNA adenine dimethylase domain containing 1; ribosomal RNA adenine dimethylase domain-containing protein 1; RRNAD1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,728,469 - 156,736,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,728,442 - 156,736,960 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,698,261 - 156,706,752 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,964,902 - 154,973,365 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,769,065 - 129,777,984 (+)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,055,758 - 128,064,577 (+)NCBIHuRef
CHM1_11158,094,485 - 158,102,953 (+)NCBICHM1_1
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:310876   PMID:10810093   PMID:12477932   PMID:19204726   PMID:19322201   PMID:24097068   PMID:31253590   PMID:33961781   PMID:35256949  


Genomics

Comparative Map Data
METTL25B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,728,469 - 156,736,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,728,442 - 156,736,960 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,698,261 - 156,706,752 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,964,902 - 154,973,365 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,769,065 - 129,777,984 (+)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,055,758 - 128,064,577 (+)NCBIHuRef
CHM1_11158,094,485 - 158,102,953 (+)NCBICHM1_1
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBIT2T-CHM13v2.0
Mettl25b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,829,908 - 87,838,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,829,908 - 87,838,024 (-)EnsemblGRCm39 Ensembl
GRCm38387,922,601 - 87,930,719 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl387,922,601 - 87,930,717 (-)EnsemblGRCm38mm10GRCm38
MGSCv37387,726,523 - 87,734,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,008,832 - 88,016,073 (-)NCBIMGSCv36mm8
Celera387,960,214 - 87,967,590 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Mettl25b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,686,483 - 175,695,137 (-)NCBIGRCr8
mRatBN7.22173,388,625 - 173,397,279 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,388,625 - 173,397,279 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,533,456 - 180,542,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,555,812 - 178,564,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,155,914 - 173,164,507 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,294,052 - 187,302,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,294,109 - 187,302,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,697,069 - 206,705,708 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,001,177 - 180,009,775 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12179,951,283 - 179,959,881 (-)NCBI
Celera2167,337,900 - 167,346,478 (-)NCBICelera
Cytogenetic Map2q34NCBI
Mettl25b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,804,456 - 2,814,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,804,327 - 2,814,081 (+)NCBIChiLan1.0ChiLan1.0
METTL25B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,107,845 - 93,116,441 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,842,349 - 92,850,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,071,430 - 132,080,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,892,971 - 135,901,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,892,971 - 135,901,981 (+)Ensemblpanpan1.1panPan2
METTL25B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,251,838 - 41,258,130 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,245,628 - 41,257,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,739,410 - 40,745,832 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,115,235 - 41,121,650 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,097,893 - 41,121,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1740,897,193 - 40,903,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0740,950,126 - 40,956,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,233,824 - 41,240,247 (-)NCBIUU_Cfam_GSD_1.0
Mettl25b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,853,571 - 26,862,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,883,996 - 5,894,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,883,977 - 5,892,476 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METTL25B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,358,143 - 93,366,082 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,358,140 - 93,366,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24101,929,781 - 101,937,664 (-)NCBISscrofa10.2Sscrofa10.2susScr3
METTL25B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,127,876 - 7,136,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,123,538 - 7,135,961 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,421,339 - 6,430,163 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mettl25b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,885,144 - 1,894,464 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,885,437 - 1,893,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in METTL25B
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q23.1-23.3(chr1:156664483-160727411)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051851]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051851]|See cases [RCV000051851] Chr1:156664483..160727411 [GRCh38]
Chr1:156634275..160697201 [GRCh37]
Chr1:154900899..158963825 [NCBI36]
Chr1:1q23.1-23.3		 pathogenic
GRCh38/hg38 1q21.3-23.1(chr1:154566501-157624084)x3 copy number gain See cases [RCV000139902] Chr1:154566501..157624084 [GRCh38]
Chr1:154538977..157593874 [GRCh37]
Chr1:152805601..155860498 [NCBI36]
Chr1:1q21.3-23.1		 pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
Single allele inversion Pediatric metastatic thyroid tumour [RCV000585807] Chr1:154130985..156843877 [GRCh37]
Chr1:1q21.3-23.1		 likely pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q22-23.1(chr1:155636337-158024499)x1 copy number loss not provided [RCV000684658] Chr1:155636337..158024499 [GRCh37]
Chr1:1q22-23.1		 pathogenic
GRCh37/hg19 1q22-23.1(chr1:155999570-156844432)x3 copy number gain not provided [RCV000684659] Chr1:155999570..156844432 [GRCh37]
Chr1:1q22-23.1		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
LMNA-NTRK1 fusion fusion Congenital fibrosarcoma [RCV000754610] Chr1:156100565..156844697 [GRCh37]
Chr1:1q22-23.1		 pathogenic
NM_015997.4(METTL25B):c.656G>A (p.Arg219His) single nucleotide variant not specified [RCV004294763] Chr1:156734028 [GRCh38]
Chr1:156703820 [GRCh37]
Chr1:1q23.1		 uncertain significance
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
GRCh37/hg19 1q23.1(chr1:156665257-156902706)x1 copy number loss not provided [RCV001829219] Chr1:156665257..156902706 [GRCh37]
Chr1:1q23.1		 uncertain significance
NC_000001.10:g.(?_155581953)_(156851434_?)del deletion Charcot-Marie-Tooth disease type 2 [RCV001983077] Chr1:155581953..156851434 [GRCh37]
Chr1:1q22-23.1		 pathogenic
NC_000001.10:g.(?_149895434)_(156851434_?)dup duplication Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency [RCV001958273]|Congenital neutropenia-myelofibrosis-nephromegaly syndrome [RCV001958271]|Kostmann syndrome [RCV003120769]|MHC class II deficiency [RCV001992607] Chr1:149895434..156851434 [GRCh37]
Chr1:1q21.2-23.1		 uncertain significance
NC_000001.10:g.(?_154141761)_(156851434_?)dup duplication Charcot-Marie-Tooth disease type 2 [RCV001990060] Chr1:154141761..156851434 [GRCh37]
Chr1:1q21.3-23.1		 uncertain significance
NM_015997.4(METTL25B):c.964C>G (p.Leu322Val) single nucleotide variant not specified [RCV004267582] Chr1:156734336 [GRCh38]
Chr1:156704128 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.133T>C (p.Trp45Arg) single nucleotide variant not specified [RCV004248733] Chr1:156732012 [GRCh38]
Chr1:156701804 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.136G>C (p.Asp46His) single nucleotide variant not specified [RCV004277779] Chr1:156732015 [GRCh38]
Chr1:156701807 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.380G>A (p.Arg127Gln) single nucleotide variant not specified [RCV004261691] Chr1:156732424 [GRCh38]
Chr1:156702216 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1321C>T (p.Leu441Phe) single nucleotide variant not specified [RCV004265513] Chr1:156736646 [GRCh38]
Chr1:156706438 [GRCh37]
Chr1:1q23.1		 uncertain significance
GRCh37/hg19 1q12-23.1(chr1:142535935-157648813)x3 copy number gain Chromosome 1q21.1 duplication syndrome [RCV003329522] Chr1:142535935..157648813 [GRCh37]
Chr1:1q12-23.1		 pathogenic
NM_015997.4(METTL25B):c.797C>G (p.Ala266Gly) single nucleotide variant not specified [RCV004339729] Chr1:156734169 [GRCh38]
Chr1:156703961 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.379C>T (p.Arg127Trp) single nucleotide variant not specified [RCV004356461] Chr1:156732423 [GRCh38]
Chr1:156702215 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.922T>C (p.Tyr308His) single nucleotide variant not specified [RCV004339894] Chr1:156734294 [GRCh38]
Chr1:156704086 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.47A>G (p.Gln16Arg) single nucleotide variant not specified [RCV004416866] Chr1:156729151 [GRCh38]
Chr1:156698943 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.673G>A (p.Val225Met) single nucleotide variant not specified [RCV004416869] Chr1:156734045 [GRCh38]
Chr1:156703837 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.716T>C (p.Leu239Pro) single nucleotide variant not specified [RCV004416871] Chr1:156734088 [GRCh38]
Chr1:156703880 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.751C>T (p.Arg251Cys) single nucleotide variant not specified [RCV004416873] Chr1:156734123 [GRCh38]
Chr1:156703915 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.767G>A (p.Gly256Asp) single nucleotide variant not specified [RCV004416875] Chr1:156734139 [GRCh38]
Chr1:156703931 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.784G>A (p.Asp262Asn) single nucleotide variant not specified [RCV004416876] Chr1:156734156 [GRCh38]
Chr1:156703948 [GRCh37]
Chr1:1q23.1		 uncertain significance
GRCh37/hg19 1q21.3-23.1(chr1:154302443-156868186)x1 copy number loss not specified [RCV003986928] Chr1:154302443..156868186 [GRCh37]
Chr1:1q21.3-23.1		 pathogenic
GRCh37/hg19 1q21.1-23.1(chr1:144368497-158992086)x3 copy number gain not specified [RCV003986717] Chr1:144368497..158992086 [GRCh37]
Chr1:1q21.1-23.1		 pathogenic
GRCh37/hg19 1q21.1-23.1(chr1:146577511-157155587)x3 copy number gain not specified [RCV003987261] Chr1:146577511..157155587 [GRCh37]
Chr1:1q21.1-23.1		 pathogenic
NM_015997.4(METTL25B):c.1017C>G (p.His339Gln) single nucleotide variant not specified [RCV004424374] Chr1:156734389 [GRCh38]
Chr1:156704181 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1282C>T (p.Arg428Trp) single nucleotide variant not specified [RCV004424381] Chr1:156735885 [GRCh38]
Chr1:156705677 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.362G>A (p.Arg121Gln) single nucleotide variant not specified [RCV004424382] Chr1:156732406 [GRCh38]
Chr1:156702198 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.478G>A (p.Val160Met) single nucleotide variant not specified [RCV004424385] Chr1:156733033 [GRCh38]
Chr1:156702825 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1024C>G (p.Arg342Gly) single nucleotide variant not specified [RCV004424375] Chr1:156734396 [GRCh38]
Chr1:156704188 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1058G>A (p.Arg353Gln) single nucleotide variant not specified [RCV004424377] Chr1:156734430 [GRCh38]
Chr1:156704222 [GRCh37]
Chr1:1q23.1		 likely benign
NM_015997.4(METTL25B):c.1094C>A (p.Pro365His) single nucleotide variant not specified [RCV004424379] Chr1:156734466 [GRCh38]
Chr1:156704258 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1051C>T (p.Arg351Trp) single nucleotide variant not specified [RCV004424376] Chr1:156734423 [GRCh38]
Chr1:156704215 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1072C>G (p.Arg358Gly) single nucleotide variant not specified [RCV004424378] Chr1:156734444 [GRCh38]
Chr1:156704236 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.1178T>C (p.Leu393Pro) single nucleotide variant not specified [RCV004424380] Chr1:156735781 [GRCh38]
Chr1:156705573 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.382A>G (p.Lys128Glu) single nucleotide variant not specified [RCV004424383] Chr1:156732426 [GRCh38]
Chr1:156702218 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.449A>G (p.Asp150Gly) single nucleotide variant not specified [RCV004424384] Chr1:156733004 [GRCh38]
Chr1:156702796 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.751C>G (p.Arg251Gly) single nucleotide variant not specified [RCV004416872] Chr1:156734123 [GRCh38]
Chr1:156703915 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.944G>A (p.Arg315Gln) single nucleotide variant not specified [RCV004416878] Chr1:156734316 [GRCh38]
Chr1:156704108 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.690C>A (p.Asp230Glu) single nucleotide variant not specified [RCV004416870] Chr1:156734062 [GRCh38]
Chr1:156703854 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.752G>A (p.Arg251His) single nucleotide variant not specified [RCV004416874] Chr1:156734124 [GRCh38]
Chr1:156703916 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.83A>G (p.Tyr28Cys) single nucleotide variant not specified [RCV004416877] Chr1:156729187 [GRCh38]
Chr1:156698979 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.531G>T (p.Leu177Phe) single nucleotide variant not specified [RCV004416867] Chr1:156733415 [GRCh38]
Chr1:156703207 [GRCh37]
Chr1:1q23.1		 uncertain significance
NM_015997.4(METTL25B):c.568G>A (p.Glu190Lys) single nucleotide variant not specified [RCV004416868] Chr1:156733452 [GRCh38]
Chr1:156703244 [GRCh37]
Chr1:1q23.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2517
Count of miRNA genes:903
Interacting mature miRNAs:1121
Transcripts:ENST00000368216, ENST00000368218, ENST00000462397, ENST00000476229, ENST00000481920, ENST00000484742, ENST00000497515, ENST00000517871, ENST00000519086, ENST00000522237, ENST00000524343
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH72  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371156,706,469 - 156,706,640UniSTSGRCh37
Build 361154,973,093 - 154,973,264RGDNCBI36
Celera1129,777,701 - 129,777,872RGD
Cytogenetic Map1q23.1UniSTS
HuRef1128,064,294 - 128,064,465UniSTS
RH64929  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371156,706,543 - 156,706,673UniSTSGRCh37
Build 361154,973,167 - 154,973,297RGDNCBI36
Celera1129,777,775 - 129,777,905RGD
Cytogenetic Map1q23.1UniSTS
HuRef1128,064,368 - 128,064,498UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2411 1771 1671 583 1423 426 4085 1521 2341 375 1434 1599 170 1187 2534 3
Low 28 1219 55 40 528 39 271 676 1393 44 26 14 5 1 17 254 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001142560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_426777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_426778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF151800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX094595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000368216   ⟹   ENSP00000357199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,728,469 - 156,736,960 (+)Ensembl
RefSeq Acc Id: ENST00000368218   ⟹   ENSP00000357201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,728,442 - 156,736,949 (+)Ensembl
RefSeq Acc Id: ENST00000462397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,733,472 - 156,734,141 (+)Ensembl
RefSeq Acc Id: ENST00000476229   ⟹   ENSP00000430787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,732,025 - 156,736,949 (+)Ensembl
RefSeq Acc Id: ENST00000481920
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,736,158 - 156,736,902 (+)Ensembl
RefSeq Acc Id: ENST00000484742   ⟹   ENSP00000429053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,729,516 - 156,733,492 (+)Ensembl
RefSeq Acc Id: ENST00000497515
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,735,622 - 156,736,960 (+)Ensembl
RefSeq Acc Id: ENST00000517871
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,732,252 - 156,733,649 (+)Ensembl
RefSeq Acc Id: ENST00000519086   ⟹   ENSP00000429756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,728,949 - 156,734,470 (+)Ensembl
RefSeq Acc Id: ENST00000522237   ⟹   ENSP00000429800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,732,385 - 156,735,800 (+)Ensembl
RefSeq Acc Id: ENST00000524343   ⟹   ENSP00000429389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,728,960 - 156,732,994 (+)Ensembl
RefSeq Acc Id: NM_001142560   ⟹   NP_001136032
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)RGD
Celera1129,769,065 - 129,777,984 (+)RGD
HuRef1128,055,758 - 128,064,577 (+)ENTREZGENE
CHM1_11158,094,485 - 158,102,953 (+)NCBI
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015997   ⟹   NP_057081
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)RGD
Build 361154,964,902 - 154,973,365 (+)NCBI Archive
Celera1129,769,065 - 129,777,984 (+)RGD
HuRef1128,055,758 - 128,064,577 (+)ENTREZGENE
CHM1_11158,094,485 - 158,102,953 (+)NCBI
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005245234   ⟹   XP_005245291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005245235   ⟹   XP_005245292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005245236   ⟹   XP_005245293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005245237   ⟹   XP_005245294
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
GRCh371156,698,263 - 156,706,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011509600   ⟹   XP_011507902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017001404   ⟹   XP_016856893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,934 - 156,736,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024447421   ⟹   XP_024303189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047421932   ⟹   XP_047277888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,735,865 (+)NCBI
RefSeq Acc Id: XM_047421937   ⟹   XP_047277893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,934 - 156,736,960 (+)NCBI
RefSeq Acc Id: XM_047421943   ⟹   XP_047277899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,934 - 156,736,960 (+)NCBI
RefSeq Acc Id: XM_047421944   ⟹   XP_047277900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,934 - 156,736,960 (+)NCBI
RefSeq Acc Id: XM_047421948   ⟹   XP_047277904
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,469 - 156,736,960 (+)NCBI
RefSeq Acc Id: XM_054336869   ⟹   XP_054192844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,782 (+)NCBI
RefSeq Acc Id: XM_054336870   ⟹   XP_054192845
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,865,301 - 155,873,793 (+)NCBI
RefSeq Acc Id: XM_054336871   ⟹   XP_054192846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBI
RefSeq Acc Id: XM_054336872   ⟹   XP_054192847
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,872,698 (+)NCBI
RefSeq Acc Id: XM_054336873   ⟹   XP_054192848
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,865,301 - 155,873,782 (+)NCBI
RefSeq Acc Id: XM_054336874   ⟹   XP_054192849
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBI
RefSeq Acc Id: XM_054336875   ⟹   XP_054192850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,782 (+)NCBI
RefSeq Acc Id: XM_054336876   ⟹   XP_054192851
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,865,301 - 155,873,793 (+)NCBI
RefSeq Acc Id: XM_054336877   ⟹   XP_054192852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,865,301 - 155,873,793 (+)NCBI
RefSeq Acc Id: XM_054336878   ⟹   XP_054192853
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,782 (+)NCBI
RefSeq Acc Id: XM_054336879   ⟹   XP_054192854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001136032 (Get FASTA)   NCBI Sequence Viewer  
  NP_057081 (Get FASTA)   NCBI Sequence Viewer  
  XP_005245291 (Get FASTA)   NCBI Sequence Viewer  
  XP_005245292 (Get FASTA)   NCBI Sequence Viewer  
  XP_005245293 (Get FASTA)   NCBI Sequence Viewer  
  XP_005245294 (Get FASTA)   NCBI Sequence Viewer  
  XP_011507902 (Get FASTA)   NCBI Sequence Viewer  
  XP_016856893 (Get FASTA)   NCBI Sequence Viewer  
  XP_024303189 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277888 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277893 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277899 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277900 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277904 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192844 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192845 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192846 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192847 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192848 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192849 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192850 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192851 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192852 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192853 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192854 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD34037 (Get FASTA)   NCBI Sequence Viewer  
  AAH11382 (Get FASTA)   NCBI Sequence Viewer  
  EAW52915 (Get FASTA)   NCBI Sequence Viewer  
  EAW52916 (Get FASTA)   NCBI Sequence Viewer  
  EAW52917 (Get FASTA)   NCBI Sequence Viewer  
  EAW52918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000357199
  ENSP00000357199.4
  ENSP00000357201
  ENSP00000357201.4
  ENSP00000429053.1
  ENSP00000429389.1
  ENSP00000429756
  ENSP00000429756.1
  ENSP00000429800.1
  ENSP00000430787.1
GenBank Protein Q96FB5 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_057081   ⟸   NM_015997
- Peptide Label: isoform 1
- UniProtKB: Q5SZ03 (UniProtKB/Swiss-Prot),   Q4VX71 (UniProtKB/Swiss-Prot),   D3DVC7 (UniProtKB/Swiss-Prot),   Q9Y358 (UniProtKB/Swiss-Prot),   Q96FB5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001136032   ⟸   NM_001142560
- Peptide Label: isoform 2
- UniProtKB: Q96FB5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005245291   ⟸   XM_005245234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005245293   ⟸   XM_005245236
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005245294   ⟸   XM_005245237
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005245292   ⟸   XM_005245235
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011507902   ⟸   XM_011509600
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016856893   ⟸   XM_017001404
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024303189   ⟸   XM_024447421
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSP00000429756   ⟸   ENST00000519086
RefSeq Acc Id: ENSP00000429800   ⟸   ENST00000522237
RefSeq Acc Id: ENSP00000429053   ⟸   ENST00000484742
RefSeq Acc Id: ENSP00000429389   ⟸   ENST00000524343
RefSeq Acc Id: ENSP00000357199   ⟸   ENST00000368216
RefSeq Acc Id: ENSP00000357201   ⟸   ENST00000368218
RefSeq Acc Id: ENSP00000430787   ⟸   ENST00000476229
RefSeq Acc Id: XP_047277904   ⟸   XM_047421948
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047277888   ⟸   XM_047421932
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047277893   ⟸   XM_047421937
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047277899   ⟸   XM_047421943
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047277900   ⟸   XM_047421944
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054192849   ⟸   XM_054336874
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054192846   ⟸   XM_054336871
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054192854   ⟸   XM_054336879
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054192844   ⟸   XM_054336869
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054192853   ⟸   XM_054336878
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054192850   ⟸   XM_054336875
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054192847   ⟸   XM_054336872
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054192851   ⟸   XM_054336876
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054192852   ⟸   XM_054336877
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054192845   ⟸   XM_054336870
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054192848   ⟸   XM_054336873
- Peptide Label: isoform X5
Protein Domains
Methyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96FB5-F1-model_v2 AlphaFold Q96FB5 1-475 view protein structure

Promoters
RGD ID:6784812
Promoter ID:HG_KWN:5560
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_015997,   OTTHUMT00000098974,   OTTHUMT00000145386
Position:
Human AssemblyChrPosition (strand)Source
Build 361154,964,856 - 154,965,356 (+)MPROMDB
RGD ID:6784813
Promoter ID:HG_KWN:5561
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000098975
Position:
Human AssemblyChrPosition (strand)Source
Build 361154,968,296 - 154,968,887 (+)MPROMDB
RGD ID:6784819
Promoter ID:HG_KWN:5562
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid
Transcripts:ENST00000385758,   OTTHUMT00000098976
Position:
Human AssemblyChrPosition (strand)Source
Build 361154,969,021 - 154,970,537 (+)MPROMDB
RGD ID:6784811
Promoter ID:HG_KWN:5563
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562
Transcripts:OTTHUMT00000098977,   OTTHUMT00000098978
Position:
Human AssemblyChrPosition (strand)Source
Build 361154,971,944 - 154,972,444 (+)MPROMDB
RGD ID:6857616
Promoter ID:EPDNEW_H1973
Type:initiation region
Name:RRNAD1_1
Description:ribosomal RNA adenine dimethylase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1970  EPDNEW_H1974  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,510 - 156,728,570EPDNEW
RGD ID:6857618
Promoter ID:EPDNEW_H1974
Type:initiation region
Name:RRNAD1_2
Description:ribosomal RNA adenine dimethylase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1970  EPDNEW_H1973  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381156,728,938 - 156,728,998EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24273 AgrOrtholog
COSMIC METTL25B COSMIC
Ensembl Genes ENSG00000143303 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000368216 ENTREZGENE
  ENST00000368216.9 UniProtKB/Swiss-Prot
  ENST00000368218 ENTREZGENE
  ENST00000368218.8 UniProtKB/Swiss-Prot
  ENST00000476229.5 UniProtKB/TrEMBL
  ENST00000484742.5 UniProtKB/TrEMBL
  ENST00000519086 ENTREZGENE
  ENST00000519086.5 UniProtKB/TrEMBL
  ENST00000522237.1 UniProtKB/TrEMBL
  ENST00000524343.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
GTEx ENSG00000143303 GTEx
HGNC ID HGNC:24273 ENTREZGENE
Human Proteome Map METTL25B Human Proteome Map
InterPro Methyltranfer_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rRNA_Ade_Mease_Trfase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51093 UniProtKB/Swiss-Prot
NCBI Gene 51093 ENTREZGENE
PANTHER CGI-41 METHYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN RRNAD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Methyltransf_32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRNA_A_DIMETH UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3DVC7 ENTREZGENE
  E5RHI7_HUMAN UniProtKB/TrEMBL
  E5RI42_HUMAN UniProtKB/TrEMBL
  E5RIL6_HUMAN UniProtKB/TrEMBL
  E5RJL6_HUMAN UniProtKB/TrEMBL
  H0YBL9_HUMAN UniProtKB/TrEMBL
  Q4VX71 ENTREZGENE
  Q5SZ03 ENTREZGENE
  Q96FB5 ENTREZGENE
  Q9Y358 ENTREZGENE
  RRNAD_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary D3DVC7 UniProtKB/Swiss-Prot
  Q4VX71 UniProtKB/Swiss-Prot
  Q5SZ03 UniProtKB/Swiss-Prot
  Q9Y358 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-15 METTL25B  methyltransferase like 25B  RRNAD1  ribosomal RNA adenine dimethylase domain containing 1  Symbol and/or name change 19259463 PROVISIONAL
2011-07-27 RRNAD1  ribosomal RNA adenine dimethylase domain containing 1  C1orf66  chromosome 1 open reading frame 66  Symbol and/or name change 5135510 APPROVED