NBPF7P (NBPF member 7, pseudogene) - Rat Genome Database

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Gene: NBPF7P (NBPF member 7, pseudogene) Homo sapiens
Analyze
Symbol: NBPF7P
Name: NBPF member 7, pseudogene
RGD ID: 1602958
HGNC Page HGNC:31989
Description: Predicted to be located in cytoplasm.
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: REVIEWED
Previously known as: hypothetical protein LOC343505; NBPF member 7; NBPF7; neuroblastoma breakpoint family member 7; neuroblastoma breakpoint family, member 7; putative neuroblastoma breakpoint family member 7
RGD Orthologs
Bonobo
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,833,709 - 119,844,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,834,870 - 119,844,514 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,376,332 - 120,387,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,178,911 - 120,189,302 (-)NCBINCBI36Build 36hg18NCBI36
Celera1118,608,089 - 118,618,486 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1118,235,908 - 118,246,039 (-)NCBIHuRef
CHM1_11120,492,887 - 120,502,976 (-)NCBICHM1_1
T2T-CHM13v2.01119,846,928 - 119,857,961 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
Additional References at PubMed
PMID:12477932   PMID:16079250   PMID:29029473  


Genomics

Comparative Map Data
NBPF7P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,833,709 - 119,844,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,834,870 - 119,844,514 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,376,332 - 120,387,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,178,911 - 120,189,302 (-)NCBINCBI36Build 36hg18NCBI36
Celera1118,608,089 - 118,618,486 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1118,235,908 - 118,246,039 (-)NCBIHuRef
CHM1_11120,492,887 - 120,502,976 (-)NCBICHM1_1
T2T-CHM13v2.01119,846,928 - 119,857,961 (-)NCBIT2T-CHM13v2.0
NBPF7P
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21112,462,908 - 112,488,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11112,065,244 - 112,090,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,682,993 - 82,706,070 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,680,687 - 117,703,823 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in NBPF7P
3 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001047980.2(NBPF7):c.102G>A (p.Glu34=) single nucleotide variant Malignant melanoma [RCV000059852] Chr1:119844434 [GRCh38]
Chr1:120387057 [GRCh37]
Chr1:120188580 [NCBI36]
Chr1:1p12		 not provided
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:135
Interacting mature miRNAs:140
Transcripts:ENST00000401014, ENST00000445758
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 142 3 3 93 3 6 1 5 22 367 8
Below cutoff 629 328 339 132 235 108 620 291 387 76 257 292 26 166 422

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000445758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1119,834,870 - 119,844,514 (-)Ensembl
RefSeq Acc Id: NR_171566
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381119,833,709 - 119,844,724 (-)NCBI
T2T-CHM13v2.01119,846,928 - 119,857,961 (-)NCBI
Sequence:
RefSeq Acc Id: NR_171567
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381119,833,709 - 119,844,724 (-)NCBI
T2T-CHM13v2.01119,846,928 - 119,857,961 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein P0C2Y1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
Olduvai

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0C2Y1-F1-model_v2 AlphaFold P0C2Y1 1-421 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC NBPF7P COSMIC
Ensembl Genes ENSG00000215864 Ensembl
GTEx ENSG00000215864 GTEx
HGNC ID HGNC:31989 ENTREZGENE
Human Proteome Map NBPF7P Human Proteome Map
InterPro Olduvai_dom UniProtKB/Swiss-Prot
NCBI Gene 343505 ENTREZGENE
OMIM 613997 OMIM
PANTHER NEUROBLASTOMA BREAKPOINT FAMILY MEMBER 7-RELATED UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam Olduvai UniProtKB/Swiss-Prot
PROSITE NBPF UniProtKB/Swiss-Prot
SMART DUF1220 UniProtKB/Swiss-Prot
UniProt NBPF7_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-15 NBPF7P  NBPF member 7, pseudogene  NBPF7  NBPF member 7  Symbol and/or name change 19259463 PROVISIONAL
2017-03-07 NBPF7  NBPF member 7    neuroblastoma breakpoint family member 7  Symbol and/or name change 5135510 APPROVED
2015-11-24 NBPF7  neuroblastoma breakpoint family member 7    neuroblastoma breakpoint family, member 7  Symbol and/or name change 5135510 APPROVED