SNORA79 (small nucleolar RNA, H/ACA box 79) - Rat Genome Database

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Gene: SNORA79 (small nucleolar RNA, H/ACA box 79) Homo sapiens
Analyze
Symbol: SNORA79
Name: small nucleolar RNA, H/ACA box 79
RGD ID: 1602552
HGNC Page HGNC:32665
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus; INTERACTS WITH 2-hydroxypropanoic acid; 4,4'-sulfonyldiphenol; bisphenol A.
Type: snorna
RefSeq Status: VALIDATED
Previously known as: ACA65; SNORA79A
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381481,202,695 - 81,202,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1481,202,695 - 81,202,834 (-)EnsemblGRCh38hg38GRCh38
GRCh371481,669,039 - 81,669,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361480,738,792 - 80,738,931 (-)NCBINCBI36Build 36hg18NCBI36
Celera1461,708,936 - 61,709,075 (-)NCBICelera
Cytogenetic Map14q31.1NCBI
HuRef1461,836,635 - 61,836,774 (-)NCBIHuRef
CHM1_11481,609,450 - 81,609,589 (-)NCBICHM1_1
T2T-CHM13v2.01475,414,919 - 75,415,058 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15199136   PMID:16381836   PMID:19446021   PMID:26867678  


Genomics

Comparative Map Data
SNORA79
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381481,202,695 - 81,202,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1481,202,695 - 81,202,834 (-)EnsemblGRCh38hg38GRCh38
GRCh371481,669,039 - 81,669,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361480,738,792 - 80,738,931 (-)NCBINCBI36Build 36hg18NCBI36
Celera1461,708,936 - 61,709,075 (-)NCBICelera
Cytogenetic Map14q31.1NCBI
HuRef1461,836,635 - 61,836,774 (-)NCBIHuRef
CHM1_11481,609,450 - 81,609,589 (-)NCBICHM1_1
T2T-CHM13v2.01475,414,919 - 75,415,058 (-)NCBIT2T-CHM13v2.0
Gm24241
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391092,524,726 - 92,524,870 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1092,524,726 - 92,524,870 (-)EnsemblGRCm39 Ensembl
GRCm381092,688,864 - 92,689,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1092,688,864 - 92,689,008 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10C2NCBI
LOC120095776
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,059,804 - 82,059,946 (+)NCBIGRCr8
mRatBN7.21168,554,777 - 68,554,919 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,554,777 - 68,554,919 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1171,799,582 - 71,799,724 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q22NCBI
LOC119873138
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha853,109,411 - 53,109,555 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0853,780,956 - 53,781,100 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl853,780,956 - 53,781,100 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1853,462,510 - 53,462,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0853,466,361 - 53,466,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0853,858,835 - 53,858,979 (-)NCBIUU_Cfam_GSD_1.0


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q24.1-31.1(chr14:69562099-81975384)x1 copy number loss See cases [RCV000134154] Chr14:69562099..81975384 [GRCh38]
Chr14:70028816..82441728 [GRCh37]
Chr14:69098569..81511481 [NCBI36]
Chr14:14q24.1-31.1		 pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3 copy number gain See cases [RCV000134000] Chr14:73655772..106879298 [GRCh38]
Chr14:74122475..107287505 [GRCh37]
Chr14:73192228..106358550 [NCBI36]
Chr14:14q24.3-32.33		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:77222795-106879298)x3 copy number gain See cases [RCV000138230] Chr14:77222795..106879298 [GRCh38]
Chr14:77689138..107287505 [GRCh37]
Chr14:76758891..106358550 [NCBI36]
Chr14:14q24.3-32.33		 pathogenic
GRCh38/hg38 14q31.1-31.3(chr14:79330723-85885507)x3 copy number gain See cases [RCV000138323] Chr14:79330723..85885507 [GRCh38]
Chr14:79797066..86351851 [GRCh37]
Chr14:78866819..85421604 [NCBI36]
Chr14:14q31.1-31.3		 likely pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q24.2-32.2(chr14:72787506-99596719)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|See cases [RCV000052293] Chr14:72787506..99596719 [GRCh38]
Chr14:73254214..100063056 [GRCh37]
Chr14:72323967..99132809 [NCBI36]
Chr14:14q24.2-32.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:173
Interacting mature miRNAs:180
Transcripts:ENST00000408376
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 8 3 14 2
Low 79 61 79 30 218 26 235 39 117 24 142 168 8 34 72 1
Below cutoff 155 189 164 46 117 24 319 106 230 34 171 181 25 80 188 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000408376
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1481,202,695 - 81,202,834 (-)Ensembl
RefSeq Acc Id: NR_003021
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381481,202,695 - 81,202,834 (-)NCBI
GRCh371481,669,039 - 81,669,178 (-)RGD
Build 361480,738,792 - 80,738,931 (-)NCBI Archive
Celera1461,708,936 - 61,709,075 (-)RGD
HuRef1461,836,635 - 61,836,774 (-)ENTREZGENE
CHM1_11481,609,450 - 81,609,589 (-)NCBI
T2T-CHM13v2.01475,414,919 - 75,415,058 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SNORA79 COSMIC
Ensembl Genes ENSG00000221303 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000408376 ENTREZGENE
GTEx ENSG00000221303 GTEx
HGNC ID HGNC:32665 ENTREZGENE
Human Proteome Map SNORA79 Human Proteome Map
NCBI Gene 677845 ENTREZGENE
PharmGKB PA144596281 PharmGKB
RNAcentral URS00006868E5 RNACentral