GTF2IRD2P1 (GTF2I repeat domain containing 2 pseudogene 1) - Rat Genome Database

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Gene: GTF2IRD2P1 (GTF2I repeat domain containing 2 pseudogene 1) Homo sapiens
Analyze
Symbol: GTF2IRD2P1
Name: GTF2I repeat domain containing 2 pseudogene 1
RGD ID: 1602026
HGNC Page HGNC:33127
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: GTF2IRD2P
Related Functional Gene: GTF2IRD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,242,751 - 73,280,119 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,243,271 - 73,280,119 (-)EnsemblGRCh38hg38GRCh38
GRCh37772,656,784 - 72,694,144 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,294,838 - 72,323,594 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map7q11.23NCBI
CHM1_1772,802,773 - 72,840,141 (-)NCBICHM1_1
T2T-CHM13v2.0774,442,958 - 74,480,301 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2771,989,856 - 72,027,216 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15100712   PMID:26276270  


Genomics

Variants

.
Variants in GTF2IRD2P1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:228
Interacting mature miRNAs:234
Transcripts:ENST00000425256, ENST00000449689
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D7S3266  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q11.23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 878 402 693 53 99 18 1242 558 652 43 958 616 39 285 944 2
Below cutoff 1448 2490 914 460 1345 336 2905 1612 3005 280 405 891 131 915 1842 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000449689
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,243,271 - 73,280,119 (-)Ensembl
RefSeq Acc Id: ENST00000618962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,242,751 - 73,266,840 (-)Ensembl
RefSeq Acc Id: ENST00000620147
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,242,869 - 73,271,614 (-)Ensembl
RefSeq Acc Id: NR_002164
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh37772,656,902 - 72,685,658 (-)RGD
Build 36772,294,838 - 72,323,594 (-)NCBI Archive
CHM1_1776,182,200 - 76,210,945 (-)NCBI
CRA_TCAGchr7v2771,989,974 - 72,018,730 (-)ENTREZGENE

Additional Information

Database Acc Id Source(s)
COSMIC GTF2IRD2P1 COSMIC
Ensembl Genes ENSG00000214544 Ensembl, ENTREZGENE
GTEx ENSG00000214544 GTEx
HGNC ID HGNC:33127 ENTREZGENE
Human Proteome Map GTF2IRD2P1 Human Proteome Map
NCBI Gene 401375 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 GTF2IRD2P1  GTF2I repeat domain containing 2 pseudogene 1  GTF2IRD2P  GTF2I repeat domain containing 2 pseudogene  Symbol and/or name change 5135510 APPROVED