CALCOCO2 (calcium binding and coiled-coil domain 2) - Rat Genome Database

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Gene: CALCOCO2 (calcium binding and coiled-coil domain 2) Homo sapiens
Analyze
Symbol: CALCOCO2
Name: calcium binding and coiled-coil domain 2
RGD ID: 1601886
HGNC Page HGNC:29912
Description: Enables protein homodimerization activity. Involved in positive regulation of autophagosome maturation; response to type II interferon; and xenophagy. Located in several cellular components, including PML body; autophagosome; and perinuclear region of cytoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: antigen nuclear dot 52 kDa protein; calcium-binding and coiled-coil domain-containing protein 2; MGC17318; NDP52; nuclear domain 10 protein 52; nuclear domain 10 protein NDP52; nuclear dot protein 52
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,831,035 - 48,865,245 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,831,018 - 48,866,522 (+)EnsemblGRCh38hg38GRCh38
GRCh371746,908,397 - 46,942,607 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,263,371 - 44,297,228 (+)NCBINCBI36Build 36hg18NCBI36
Celera1743,362,488 - 43,396,512 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBIHuRef
CHM1_11746,974,341 - 47,008,496 (+)NCBICHM1_1
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7540613   PMID:8125298   PMID:9230084   PMID:12033769   PMID:12477932   PMID:12869526   PMID:14747555   PMID:15231748   PMID:16189514   PMID:16969126   PMID:17207965   PMID:17635994  
PMID:18029348   PMID:18330356   PMID:18985028   PMID:19285159   PMID:19820708   PMID:19946888   PMID:21079414   PMID:21516116   PMID:21552525   PMID:21565611   PMID:21646350   PMID:21653829  
PMID:21873635   PMID:21903422   PMID:21964925   PMID:21988832   PMID:22246324   PMID:23022382   PMID:23143396   PMID:23209807   PMID:23245322   PMID:23386746   PMID:23503661   PMID:23511477  
PMID:23624108   PMID:24453968   PMID:24457600   PMID:24722188   PMID:25033267   PMID:25366815   PMID:25416956   PMID:25771791   PMID:25910212   PMID:25969509   PMID:26186194   PMID:26266977  
PMID:26451915   PMID:26493630   PMID:26506893   PMID:26641092   PMID:26871637   PMID:26971995   PMID:27107014   PMID:27216961   PMID:27684187   PMID:27693506   PMID:27879200   PMID:28031328  
PMID:28514442   PMID:28613140   PMID:28848034   PMID:28965816   PMID:29146913   PMID:29187741   PMID:29395717   PMID:29474632   PMID:29478914   PMID:29791506   PMID:29892012   PMID:30154446  
PMID:30309841   PMID:30459273   PMID:30561431   PMID:30679426   PMID:30853401   PMID:30853402   PMID:30948266   PMID:31009519   PMID:31304625   PMID:31371777   PMID:31515488   PMID:31723608  
PMID:31744880   PMID:31868081   PMID:32296183   PMID:32296703   PMID:32476569   PMID:32556086   PMID:32707033   PMID:32773036   PMID:33087562   PMID:33301849   PMID:33545068   PMID:33577621  
PMID:33644029   PMID:33723372   PMID:33815386   PMID:33961781   PMID:34225486   PMID:34226595   PMID:34257412   PMID:34389544   PMID:34612687   PMID:34672947   PMID:34839354   PMID:35100065  
PMID:35331737   PMID:35406696   PMID:35563538   PMID:35695513   PMID:35831314   PMID:35914352   PMID:36114200   PMID:36126167   PMID:36215168   PMID:36317879   PMID:36514953   PMID:36543142  
PMID:36622894   PMID:36692217   PMID:36736316   PMID:36861818   PMID:36898370   PMID:37777549   PMID:37942585  


Genomics

Comparative Map Data
CALCOCO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,831,035 - 48,865,245 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,831,018 - 48,866,522 (+)EnsemblGRCh38hg38GRCh38
GRCh371746,908,397 - 46,942,607 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,263,371 - 44,297,228 (+)NCBINCBI36Build 36hg18NCBI36
Celera1743,362,488 - 43,396,512 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBIHuRef
CHM1_11746,974,341 - 47,008,496 (+)NCBICHM1_1
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBIT2T-CHM13v2.0
Calcoco2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,990,195 - 96,015,362 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,990,152 - 96,002,790 (-)EnsemblGRCm39 Ensembl
GRCm381196,098,916 - 96,124,560 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,099,326 - 96,111,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,960,640 - 95,973,276 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,915,005 - 95,928,054 (-)NCBIMGSCv36mm8
Celera11105,750,331 - 105,762,857 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.4NCBI
Calcoco2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,552,084 - 81,568,266 (-)NCBIGRCr8
mRatBN7.21081,055,467 - 81,069,298 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01083,935,087 - 83,963,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01083,731,658 - 83,757,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,820,832 - 84,847,065 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1079,823,176 - 79,838,506 (-)NCBICelera
Cytogenetic Map10q26NCBI
Calcoco2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,443,796 - 12,469,857 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,443,262 - 12,469,608 (-)NCBIChiLan1.0ChiLan1.0
CALCOCO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,237,637 - 16,271,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,203,227 - 18,237,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,671,682 - 8,705,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,858,056 - 8,891,297 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,858,872 - 8,891,276 (-)Ensemblpanpan1.1panPan2
CALCOCO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,050,603 - 25,078,147 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,050,690 - 25,077,557 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,514,436 - 24,541,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,845,530 - 25,873,110 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,845,631 - 25,873,692 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,613,433 - 24,640,979 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,873,840 - 24,901,366 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,002,881 - 25,030,259 (+)NCBIUU_Cfam_GSD_1.0
Calcoco2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,465,867 - 24,499,885 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649012,576,752 - 12,609,273 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALCOCO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,050,081 - 25,088,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,050,008 - 25,080,230 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,005,409 - 25,036,175 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALCOCO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,242,720 - 69,274,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,251,963 - 69,273,384 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,342,413 - 40,375,248 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calcoco2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,265,141 - 5,283,719 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,259,976 - 5,281,958 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CALCOCO2
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3 copy number gain See cases [RCV000050957] Chr17:36449220..68170214 [GRCh38]
Chr17:48563237..65936105 [GRCh37]
Chr17:45918236..63677950 [NCBI36]
Chr17:17q21.33-24.2		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q21.31-21.33(chr17:44955325-49381173)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052480]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052480]|See cases [RCV000052480] Chr17:44955325..49381173 [GRCh38]
Chr17:43032693..47458535 [GRCh37]
Chr17:40388219..44813534 [NCBI36]
Chr17:17q21.31-21.33		 pathogenic
GRCh38/hg38 17q21.32-21.33(chr17:48520885-49511208)x1 copy number loss See cases [RCV000053431] Chr17:48520885..49511208 [GRCh38]
Chr17:46598247..47588570 [GRCh37]
Chr17:43953246..44943569 [NCBI36]
Chr17:17q21.32-21.33		 pathogenic
GRCh38/hg38 17q21.32-21.33(chr17:47986886-49329397)x1 copy number loss See cases [RCV000142900] Chr17:47986886..49329397 [GRCh38]
Chr17:46064252..47406759 [GRCh37]
Chr17:43419251..44761758 [NCBI36]
Chr17:17q21.32-21.33		 pathogenic
GRCh38/hg38 17q21.32-21.33(chr17:48450628-49552921)x3 copy number gain See cases [RCV000143451] Chr17:48450628..49552921 [GRCh38]
Chr17:46527990..47630283 [GRCh37]
Chr17:43882989..44985282 [NCBI36]
Chr17:17q21.32-21.33		 uncertain significance
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1		 pathogenic
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_005831.5(CALCOCO2):c.421G>A (p.Glu141Lys) single nucleotide variant not specified [RCV004305790] Chr17:48849255 [GRCh38]
Chr17:46926617 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.211A>G (p.Thr71Ala) single nucleotide variant not specified [RCV004312708] Chr17:48848094 [GRCh38]
Chr17:46925456 [GRCh37]
Chr17:17q21.32		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q21.32-22(chr17:46481089-51396368)x1 copy number loss not provided [RCV000513510] Chr17:46481089..51396368 [GRCh37]
Chr17:17q21.32-22		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q21.32(chr17:46788433-46977125)x3 copy number gain not provided [RCV000739611] Chr17:46788433..46977125 [GRCh37]
Chr17:17q21.32		 benign
GRCh37/hg19 17q21.32-21.33(chr17:46899690-47540874)x3 copy number gain not provided [RCV000849505] Chr17:46899690..47540874 [GRCh37]
Chr17:17q21.32-21.33		 uncertain significance
GRCh37/hg19 17q21.32(chr17:46874271-47158974)x3 copy number gain not provided [RCV000848908] Chr17:46874271..47158974 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.1224C>A (p.His408Gln) single nucleotide variant not specified [RCV004291636] Chr17:48862888 [GRCh38]
Chr17:46940250 [GRCh37]
Chr17:17q21.32		 uncertain significance
GRCh37/hg19 17q21.32-21.33(chr17:46753824-47577721)x3 copy number gain not provided [RCV002472415] Chr17:46753824..47577721 [GRCh37]
Chr17:17q21.32-21.33		 uncertain significance
NM_005831.5(CALCOCO2):c.200G>A (p.Arg67His) single nucleotide variant not specified [RCV004170781] Chr17:48848083 [GRCh38]
Chr17:46925445 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.193A>G (p.Thr65Ala) single nucleotide variant not specified [RCV004142989] Chr17:48848076 [GRCh38]
Chr17:46925438 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.566G>A (p.Ser189Asn) single nucleotide variant not specified [RCV004190812] Chr17:48851111 [GRCh38]
Chr17:46928473 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.1043A>G (p.Tyr348Cys) single nucleotide variant not specified [RCV004178913] Chr17:48860348 [GRCh38]
Chr17:46937710 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.952G>A (p.Glu318Lys) single nucleotide variant not specified [RCV004069583] Chr17:48856131 [GRCh38]
Chr17:46933493 [GRCh37]
Chr17:17q21.32		 likely benign
NM_005831.5(CALCOCO2):c.800A>G (p.His267Arg) single nucleotide variant not specified [RCV004075593] Chr17:48852603 [GRCh38]
Chr17:46929965 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.911T>C (p.Met304Thr) single nucleotide variant not specified [RCV004178829] Chr17:48853011 [GRCh38]
Chr17:46930373 [GRCh37]
Chr17:17q21.32		 likely benign
NM_005831.5(CALCOCO2):c.349C>T (p.Arg117Trp) single nucleotide variant not specified [RCV004219140] Chr17:48848387 [GRCh38]
Chr17:46925749 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.1169G>C (p.Ser390Thr) single nucleotide variant not specified [RCV004310031] Chr17:48862300 [GRCh38]
Chr17:46939662 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.491T>A (p.Ile164Asn) single nucleotide variant not specified [RCV004268926] Chr17:48849325 [GRCh38]
Chr17:46926687 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.617A>C (p.Glu206Ala) single nucleotide variant not specified [RCV004277083] Chr17:48851162 [GRCh38]
Chr17:46928524 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.1127A>G (p.Tyr376Cys) single nucleotide variant not specified [RCV004318007] Chr17:48860432 [GRCh38]
Chr17:46937794 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.541C>A (p.Gln181Lys) single nucleotide variant not specified [RCV004346204] Chr17:48849375 [GRCh38]
Chr17:46926737 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.1262A>G (p.Asn421Ser) single nucleotide variant not specified [RCV004339204] Chr17:48862926 [GRCh38]
Chr17:46940288 [GRCh37]
Chr17:17q21.32		 uncertain significance
Single allele deletion Tricho-dento-osseous syndrome [RCV003494599] Chr17:46740736..48853218 [GRCh37]
Chr17:17q21.32-21.33		 pathogenic
GRCh37/hg19 17q21.32(chr17:46867374-46972775)x3 copy number gain not specified [RCV003987233] Chr17:46867374..46972775 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.376C>T (p.Arg126Cys) single nucleotide variant not specified [RCV004434504] Chr17:48848414 [GRCh38]
Chr17:46925776 [GRCh37]
Chr17:17q21.32		 uncertain significance
NM_005831.5(CALCOCO2):c.935A>G (p.Lys312Arg) single nucleotide variant not specified [RCV004434506] Chr17:48856114 [GRCh38]
Chr17:46933476 [GRCh37]
Chr17:17q21.32		 likely benign
NM_005831.5(CALCOCO2):c.524C>T (p.Ala175Val) single nucleotide variant not specified [RCV004434505] Chr17:48849358 [GRCh38]
Chr17:46926720 [GRCh37]
Chr17:17q21.32		 uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIRLET7Dhsa-let-7d-5pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)20371350

Predicted Target Of
Summary Value
Count of predictions:4933
Count of miRNA genes:1285
Interacting mature miRNAs:1650
Transcripts:ENST00000258947, ENST00000372317, ENST00000416445, ENST00000448105, ENST00000502761, ENST00000503463, ENST00000505071, ENST00000506971, ENST00000507076, ENST00000507306, ENST00000508679, ENST00000509014, ENST00000509112, ENST00000509415, ENST00000509507, ENST00000509784, ENST00000510356, ENST00000510997, ENST00000511697, ENST00000511816, ENST00000513119, ENST00000514006, ENST00000514267, ENST00000514962, ENST00000570513, ENST00000575461, ENST00000575560, ENST00000576582
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-33986  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,933,065 - 46,933,190UniSTSGRCh37
Build 361744,288,064 - 44,288,189RGDNCBI36
Celera1743,387,346 - 43,387,471RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,301,301 - 42,301,426UniSTS
Stanford-G3 RH Map172091.0UniSTS
GeneMap99-GB4 RH Map17340.04UniSTS
Whitehead-RH Map17374.2UniSTS
NCBI RH Map17638.1UniSTS
GeneMap99-G3 RH Map172592.0UniSTS
STS-U22897  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,940,926 - 46,941,113UniSTSGRCh37
Build 361744,295,925 - 44,296,112RGDNCBI36
Celera1743,395,208 - 43,395,395RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,309,225 - 42,309,412UniSTS
GeneMap99-GB4 RH Map17340.15UniSTS
NCBI RH Map17638.1UniSTS
SGC34389  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,933,475 - 46,933,605UniSTSGRCh37
Build 361744,288,474 - 44,288,604RGDNCBI36
Celera1743,387,756 - 43,387,886RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,301,711 - 42,301,841UniSTS
GeneMap99-GB4 RH Map17339.63UniSTS
Whitehead-RH Map17374.7UniSTS
NCBI RH Map17638.1UniSTS
WI-11586  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,941,079 - 46,941,211UniSTSGRCh37
Build 361744,296,078 - 44,296,210RGDNCBI36
Celera1743,395,361 - 43,395,493RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,309,378 - 42,309,510UniSTS
GeneMap99-GB4 RH Map17339.67UniSTS
Whitehead-RH Map17375.6UniSTS
NCBI RH Map17638.1UniSTS
SGC32799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,941,664 - 46,941,810UniSTSGRCh37
Build 361744,296,663 - 44,296,809RGDNCBI36
Celera1743,395,947 - 43,396,093RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,309,964 - 42,310,110UniSTS
TNG Radiation Hybrid Map1722212.0UniSTS
GeneMap99-GB4 RH Map17342.34UniSTS
Whitehead-RH Map17375.4UniSTS
NCBI RH Map17638.1UniSTS
RH48296  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371746,941,894 - 46,942,019UniSTSGRCh37
Build 361744,296,893 - 44,297,018RGDNCBI36
Celera1743,396,177 - 43,396,302RGD
Cytogenetic Map17q21.32UniSTS
HuRef1742,310,194 - 42,310,319UniSTS
GeneMap99-GB4 RH Map17340.35UniSTS
D15S1477  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q32-q35UniSTS
Cytogenetic Map5q11UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map2q31UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map19pUniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map3p25-p24UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map3p12UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map6p21.1-p12.2UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map14q11.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map9p22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p22.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map15q21-q23UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map11q23.2UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map17qUniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map6p24.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2437 2876 1711 613 1878 454 4330 2142 3301 403 1443 1607 175 1 1204 2787 5 2
Low 2 115 15 11 73 11 27 55 433 16 17 6 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001261390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001261391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001261393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001261395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC068531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF085965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL042638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL046722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE315542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG773301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU620013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U22897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000258947   ⟹   ENSP00000258947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,865,245 (+)Ensembl
RefSeq Acc Id: ENST00000372317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,037 - 48,842,294 (+)Ensembl
RefSeq Acc Id: ENST00000416445   ⟹   ENSP00000406974
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,863,174 (+)Ensembl
RefSeq Acc Id: ENST00000448105   ⟹   ENSP00000398523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,034 - 48,863,453 (+)Ensembl
RefSeq Acc Id: ENST00000502761   ⟹   ENSP00000424889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,841,563 - 48,851,124 (+)Ensembl
RefSeq Acc Id: ENST00000503463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,018 - 48,848,562 (+)Ensembl
RefSeq Acc Id: ENST00000505071   ⟹   ENSP00000422697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,056 - 48,849,269 (+)Ensembl
RefSeq Acc Id: ENST00000506971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,852,340 - 48,860,360 (+)Ensembl
RefSeq Acc Id: ENST00000507076   ⟹   ENSP00000424169
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,228 - 48,848,336 (+)Ensembl
RefSeq Acc Id: ENST00000507306   ⟹   ENSP00000424083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,852,961 - 48,863,221 (+)Ensembl
RefSeq Acc Id: ENST00000508679   ⟹   ENSP00000423437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,863,196 (+)Ensembl
RefSeq Acc Id: ENST00000509014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,847,724 - 48,848,455 (+)Ensembl
RefSeq Acc Id: ENST00000509112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,851,603 - 48,853,235 (+)Ensembl
RefSeq Acc Id: ENST00000509415   ⟹   ENSP00000425692
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,851,133 (+)Ensembl
RefSeq Acc Id: ENST00000509507   ⟹   ENSP00000424352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,026 - 48,863,050 (+)Ensembl
RefSeq Acc Id: ENST00000509784   ⟹   ENSP00000429963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,856,101 - 48,863,125 (+)Ensembl
RefSeq Acc Id: ENST00000510356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,842,662 (+)Ensembl
RefSeq Acc Id: ENST00000510997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,865,085 - 48,866,522 (+)Ensembl
RefSeq Acc Id: ENST00000511697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,045 - 48,842,534 (+)Ensembl
RefSeq Acc Id: ENST00000511816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,851,207 - 48,852,645 (+)Ensembl
RefSeq Acc Id: ENST00000513119   ⟹   ENSP00000425090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,856,174 (+)Ensembl
RefSeq Acc Id: ENST00000514006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,851,101 - 48,852,858 (+)Ensembl
RefSeq Acc Id: ENST00000514267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,850,982 - 48,851,698 (+)Ensembl
RefSeq Acc Id: ENST00000514962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,848,209 - 48,853,035 (+)Ensembl
RefSeq Acc Id: ENST00000570513   ⟹   ENSP00000461083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,848,401 (+)Ensembl
RefSeq Acc Id: ENST00000575461
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,855,803 - 48,856,267 (+)Ensembl
RefSeq Acc Id: ENST00000575560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,035 - 48,848,245 (+)Ensembl
RefSeq Acc Id: ENST00000576582   ⟹   ENSP00000461184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1748,831,043 - 48,848,443 (+)Ensembl
RefSeq Acc Id: NM_001261390   ⟹   NP_001248319
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,865,245 (+)NCBI
GRCh371746,908,350 - 46,942,607 (+)NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBI
CHM1_11746,974,341 - 47,008,496 (+)NCBI
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001261391   ⟹   NP_001248320
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,865,245 (+)NCBI
GRCh371746,908,350 - 46,942,607 (+)NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBI
CHM1_11746,974,341 - 47,008,496 (+)NCBI
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001261393   ⟹   NP_001248322
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,865,245 (+)NCBI
GRCh371746,908,350 - 46,942,607 (+)NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBI
CHM1_11746,974,341 - 47,008,496 (+)NCBI
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001261395   ⟹   NP_001248324
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,865,245 (+)NCBI
GRCh371746,908,350 - 46,942,607 (+)NCBI
HuRef1742,276,617 - 42,310,907 (+)NCBI
CHM1_11746,974,341 - 47,008,496 (+)NCBI
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBI
Sequence:
RefSeq Acc Id: NM_005831   ⟹   NP_005822
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,865,245 (+)NCBI
GRCh371746,908,350 - 46,942,607 (+)NCBI
Build 361744,263,371 - 44,297,228 (+)NCBI Archive
Celera1743,362,488 - 43,396,512 (+)RGD
HuRef1742,276,617 - 42,310,907 (+)NCBI
CHM1_11746,974,341 - 47,008,496 (+)NCBI
T2T-CHM13v2.01749,694,621 - 49,728,978 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047435099   ⟹   XP_047291055
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,846,669 - 48,865,245 (+)NCBI
RefSeq Acc Id: XM_047435100   ⟹   XP_047291056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,844,008 - 48,865,245 (+)NCBI
RefSeq Acc Id: XM_054314672   ⟹   XP_054170647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01749,710,240 - 49,728,978 (+)NCBI
RefSeq Acc Id: XM_054314673   ⟹   XP_054170648
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01749,707,581 - 49,728,978 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001248319 (Get FASTA)   NCBI Sequence Viewer  
  NP_001248320 (Get FASTA)   NCBI Sequence Viewer  
  NP_001248322 (Get FASTA)   NCBI Sequence Viewer  
  NP_001248324 (Get FASTA)   NCBI Sequence Viewer  
  NP_005822 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291055 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291056 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170647 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170648 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA75297 (Get FASTA)   NCBI Sequence Viewer  
  AAH04130 (Get FASTA)   NCBI Sequence Viewer  
  AAH15893 (Get FASTA)   NCBI Sequence Viewer  
  BAD96386 (Get FASTA)   NCBI Sequence Viewer  
  BAD96947 (Get FASTA)   NCBI Sequence Viewer  
  BAG37327 (Get FASTA)   NCBI Sequence Viewer  
  BAG56685 (Get FASTA)   NCBI Sequence Viewer  
  BAG56845 (Get FASTA)   NCBI Sequence Viewer  
  BAG60448 (Get FASTA)   NCBI Sequence Viewer  
  BAG64382 (Get FASTA)   NCBI Sequence Viewer  
  BAG64939 (Get FASTA)   NCBI Sequence Viewer  
  CAG33044 (Get FASTA)   NCBI Sequence Viewer  
  EAW94707 (Get FASTA)   NCBI Sequence Viewer  
  EAW94708 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000258947
  ENSP00000258947.3
  ENSP00000398523
  ENSP00000398523.2
  ENSP00000406974
  ENSP00000406974.2
  ENSP00000422697.1
  ENSP00000423437
  ENSP00000423437.1
  ENSP00000424083.1
  ENSP00000424169.1
  ENSP00000424352
  ENSP00000424352.1
  ENSP00000424889.1
  ENSP00000425090.1
  ENSP00000425692.1
  ENSP00000429963.1
  ENSP00000461083.1
  ENSP00000461184.1
GenBank Protein Q13137 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_005822   ⟸   NM_005831
- Peptide Label: isoform 3
- UniProtKB: Q6IBN9 (UniProtKB/Swiss-Prot),   Q53HB5 (UniProtKB/Swiss-Prot),   Q53FQ5 (UniProtKB/Swiss-Prot),   E9PBE5 (UniProtKB/Swiss-Prot),   E7ETP5 (UniProtKB/Swiss-Prot),   E7ENK0 (UniProtKB/Swiss-Prot),   B4E0C0 (UniProtKB/Swiss-Prot),   B4DP36 (UniProtKB/Swiss-Prot),   B4DDT4 (UniProtKB/Swiss-Prot),   B4DDC4 (UniProtKB/Swiss-Prot),   B2RBT0 (UniProtKB/Swiss-Prot),   Q9BTF7 (UniProtKB/Swiss-Prot),   Q13137 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001248320   ⟸   NM_001261391
- Peptide Label: isoform 2
- UniProtKB: Q13137 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001248319   ⟸   NM_001261390
- Peptide Label: isoform 1
- UniProtKB: Q13137 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001248322   ⟸   NM_001261393
- Peptide Label: isoform 4
- UniProtKB: Q13137 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001248324   ⟸   NM_001261395
- Peptide Label: isoform 5
- UniProtKB: Q13137 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000424889   ⟸   ENST00000502761
RefSeq Acc Id: ENSP00000422697   ⟸   ENST00000505071
RefSeq Acc Id: ENSP00000461083   ⟸   ENST00000570513
RefSeq Acc Id: ENSP00000424169   ⟸   ENST00000507076
RefSeq Acc Id: ENSP00000424083   ⟸   ENST00000507306
RefSeq Acc Id: ENSP00000258947   ⟸   ENST00000258947
RefSeq Acc Id: ENSP00000423437   ⟸   ENST00000508679
RefSeq Acc Id: ENSP00000424352   ⟸   ENST00000509507
RefSeq Acc Id: ENSP00000425692   ⟸   ENST00000509415
RefSeq Acc Id: ENSP00000406974   ⟸   ENST00000416445
RefSeq Acc Id: ENSP00000429963   ⟸   ENST00000509784
RefSeq Acc Id: ENSP00000461184   ⟸   ENST00000576582
RefSeq Acc Id: ENSP00000398523   ⟸   ENST00000448105
RefSeq Acc Id: ENSP00000425090   ⟸   ENST00000513119
RefSeq Acc Id: XP_047291056   ⟸   XM_047435100
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047291055   ⟸   XM_047435099
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054170648   ⟸   XM_054314673
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054170647   ⟸   XM_054314672
- Peptide Label: isoform X1
Protein Domains
SKICH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q13137-F1-model_v2 AlphaFold Q13137 1-446 view protein structure

Promoters
RGD ID:6793829
Promoter ID:HG_KWN:26512
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_005831
Position:
Human AssemblyChrPosition (strand)Source
Build 361744,263,244 - 44,263,744 (+)MPROMDB
RGD ID:7235541
Promoter ID:EPDNEW_H23517
Type:initiation region
Name:CALCOCO2_1
Description:calcium binding and coiled-coil domain 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381748,831,035 - 48,831,095EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29912 AgrOrtholog
COSMIC CALCOCO2 COSMIC
Ensembl Genes ENSG00000136436 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000258947 ENTREZGENE
  ENST00000258947.8 UniProtKB/Swiss-Prot
  ENST00000416445 ENTREZGENE
  ENST00000416445.6 UniProtKB/Swiss-Prot
  ENST00000448105 ENTREZGENE
  ENST00000448105.6 UniProtKB/Swiss-Prot
  ENST00000502761.1 UniProtKB/TrEMBL
  ENST00000505071.5 UniProtKB/TrEMBL
  ENST00000507076.1 UniProtKB/TrEMBL
  ENST00000507306.1 UniProtKB/TrEMBL
  ENST00000508679 ENTREZGENE
  ENST00000508679.5 UniProtKB/Swiss-Prot
  ENST00000509415.5 UniProtKB/TrEMBL
  ENST00000509507 ENTREZGENE
  ENST00000509507.5 UniProtKB/Swiss-Prot
  ENST00000509784.1 UniProtKB/TrEMBL
  ENST00000513119.5 UniProtKB/TrEMBL
  ENST00000570513.5 UniProtKB/TrEMBL
  ENST00000576582.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2840 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.20.250.40 UniProtKB/Swiss-Prot
GTEx ENSG00000136436 GTEx
HGNC ID HGNC:29912 ENTREZGENE
Human Proteome Map CALCOCO2 Human Proteome Map
InterPro CALCOCO1/2_Zn_UBZ1 UniProtKB/Swiss-Prot
  SKICH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10241 UniProtKB/Swiss-Prot
NCBI Gene 10241 ENTREZGENE
OMIM 604587 OMIM
PANTHER CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKICH DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SKICH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA143485407 PharmGKB
PROSITE ZF_UBZ1 UniProtKB/Swiss-Prot
UniProt B2RBT0 ENTREZGENE
  B4DDC4 ENTREZGENE
  B4DDT4 ENTREZGENE
  B4DP36 ENTREZGENE
  B4E0C0 ENTREZGENE
  CACO2_HUMAN UniProtKB/Swiss-Prot
  D6RBF9_HUMAN UniProtKB/TrEMBL
  D6RBI4_HUMAN UniProtKB/TrEMBL
  D6REB0_HUMAN UniProtKB/TrEMBL
  D6RF70_HUMAN UniProtKB/TrEMBL
  D6RJE7_HUMAN UniProtKB/TrEMBL
  E7ENK0 ENTREZGENE
  E7ETP5 ENTREZGENE
  E9PBE5 ENTREZGENE
  H0Y9G3_HUMAN UniProtKB/TrEMBL
  H0YBP4_HUMAN UniProtKB/TrEMBL
  I3L493_HUMAN UniProtKB/TrEMBL
  I3L4E1_HUMAN UniProtKB/TrEMBL
  Q13137 ENTREZGENE
  Q53FQ5 ENTREZGENE
  Q53HB5 ENTREZGENE
  Q6IBN9 ENTREZGENE
  Q9BTF7 ENTREZGENE
UniProt Secondary B2RBT0 UniProtKB/Swiss-Prot
  B4DDC4 UniProtKB/Swiss-Prot
  B4DDT4 UniProtKB/Swiss-Prot
  B4DP36 UniProtKB/Swiss-Prot
  B4E0C0 UniProtKB/Swiss-Prot
  E7ENK0 UniProtKB/Swiss-Prot
  E7ETP5 UniProtKB/Swiss-Prot
  E9PBE5 UniProtKB/Swiss-Prot
  Q53FQ5 UniProtKB/Swiss-Prot
  Q53HB5 UniProtKB/Swiss-Prot
  Q6IBN9 UniProtKB/Swiss-Prot
  Q9BTF7 UniProtKB/Swiss-Prot