SELENOS (selenoprotein S) - Rat Genome Database

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Gene: SELENOS (selenoprotein S) Homo sapiens
Analyze
Symbol: SELENOS
Name: selenoprotein S
RGD ID: 1601754
HGNC Page HGNC:30396
Description: Enables ATPase binding activity; antioxidant activity; and ubiquitin-specific protease binding activity. Involved in several processes, including cell redox homeostasis; negative regulation of apoptotic process; and negative regulation of nitric-oxide synthase biosynthetic process. Located in cytoplasmic microtubule and endoplasmic reticulum membrane. Part of endoplasmic reticulum membrane; low-density lipoprotein particle; and very-low-density lipoprotein particle. Biomarker of colorectal adenoma and colorectal carcinoma.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AD-015; ADO15; MGC104346; MGC2553; SBBI8; SELS; SEPS1; tanis; VCP interacting membrane selenoprotein; VCP-interacting membrane selenoprotein; VIMP
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815101,270,809 - 101,277,485 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15101,270,817 - 101,277,500 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,811,014 - 101,817,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,628,737 - 99,635,223 (-)NCBINCBI36Build 36hg18NCBI36
Celera1578,224,059 - 78,230,545 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,933,623 - 77,940,109 (-)NCBIHuRef
CHM1_115101,652,200 - 101,658,686 (-)NCBICHM1_1
T2T-CHM13v2.01599,025,841 - 99,032,517 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Schizophrenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Expression of Selenoprotein Genes and Association with Selenium Status in Colorectal Adenoma and Colorectal Cancer. Hughes DJ, etal., Nutrients. 2018 Nov 21;10(11). pii: nu10111812. doi: 10.3390/nu10111812.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7829101   PMID:8125298   PMID:8889548   PMID:10931946   PMID:12031974   PMID:12477932   PMID:12663463   PMID:12775843   PMID:14702039   PMID:15063746   PMID:15161744   PMID:15215856  
PMID:15229221   PMID:15489334   PMID:16186509   PMID:16186510   PMID:16227999   PMID:16289116   PMID:16574427   PMID:16751776   PMID:17000876   PMID:17210132   PMID:17374524   PMID:17641917  
PMID:17661913   PMID:17872946   PMID:17880573   PMID:18029348   PMID:18068137   PMID:18199748   PMID:18625033   PMID:18626009   PMID:18675776   PMID:18710632   PMID:18728048   PMID:18974842  
PMID:19144102   PMID:19164805   PMID:19336475   PMID:19398551   PMID:19948975   PMID:20114070   PMID:20378690   PMID:20619427   PMID:21052528   PMID:21456042   PMID:21832065   PMID:21873635  
PMID:22119785   PMID:22479358   PMID:22700979   PMID:22708491   PMID:23161441   PMID:23264731   PMID:23602568   PMID:23614019   PMID:23776519   PMID:23829426   PMID:23867461   PMID:23914919  
PMID:24068947   PMID:24089527   PMID:24275540   PMID:24424410   PMID:24471570   PMID:24573439   PMID:24700463   PMID:24807418   PMID:25008318   PMID:25390504   PMID:25433273   PMID:26016409  
PMID:26275350   PMID:26382012   PMID:26504085   PMID:26549226   PMID:27121097   PMID:27802219   PMID:28315680   PMID:28514442   PMID:29180619   PMID:29395067   PMID:29513927   PMID:29540532  
PMID:29555962   PMID:29599191   PMID:30082770   PMID:30194290   PMID:30413610   PMID:30526872   PMID:30572598   PMID:31056421   PMID:31265177   PMID:31426718   PMID:31542866   PMID:31846435  
PMID:31880214   PMID:32296183   PMID:32353859   PMID:33060197   PMID:33290140   PMID:33671632   PMID:33845483   PMID:33961781   PMID:34079125   PMID:34597346   PMID:34672954   PMID:35271311  
PMID:35337019   PMID:35569765   PMID:36217030   PMID:36773692   PMID:37092056  


Genomics

Comparative Map Data
SELENOS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815101,270,809 - 101,277,485 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15101,270,817 - 101,277,500 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,811,014 - 101,817,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,628,737 - 99,635,223 (-)NCBINCBI36Build 36hg18NCBI36
Celera1578,224,059 - 78,230,545 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,933,623 - 77,940,109 (-)NCBIHuRef
CHM1_115101,652,200 - 101,658,686 (-)NCBICHM1_1
T2T-CHM13v2.01599,025,841 - 99,032,517 (-)NCBIT2T-CHM13v2.0
Selenos
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,729,397 - 65,739,153 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl765,729,397 - 65,739,153 (+)EnsemblGRCm39 Ensembl
GRCm38766,079,649 - 66,089,405 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,079,649 - 66,089,405 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,224,535 - 73,234,291 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36765,958,609 - 65,968,353 (+)NCBIMGSCv36mm8
Celera763,515,279 - 63,525,171 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.49NCBI
Selenos
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,070,240 - 129,080,007 (+)NCBIGRCr8
mRatBN7.21119,659,779 - 119,669,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1119,659,751 - 119,669,833 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1127,652,801 - 127,662,498 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,824,245 - 134,833,942 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01127,633,662 - 127,643,427 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01126,979,579 - 126,989,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1126,979,575 - 126,989,344 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,065,929 - 128,075,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,509,100 - 120,518,867 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11120,587,444 - 120,597,210 (+)NCBI
Celera1111,871,435 - 111,881,202 (+)NCBICelera
Cytogenetic Map1q22NCBI
Selenos
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,153,460 - 28,162,095 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,152,984 - 28,162,173 (-)NCBIChiLan1.0ChiLan1.0
SELENOS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,861,442 - 90,867,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11594,561,283 - 94,569,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,995,678 - 80,002,159 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11599,279,195 - 99,285,682 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1599,279,203 - 99,285,682 (-)Ensemblpanpan1.1panPan2
SELENOS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1339,796,711 - 39,805,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl339,796,711 - 39,805,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha342,486,298 - 42,495,243 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0340,188,127 - 40,197,076 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,188,094 - 40,197,506 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1339,721,571 - 39,730,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0339,958,383 - 39,967,333 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,159,929 - 40,168,876 (+)NCBIUU_Cfam_GSD_1.0
Selenos
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,733,962 - 143,744,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364832,589,828 - 2,599,987 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364832,589,773 - 2,600,837 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,828,791 - 139,836,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11139,829,002 - 139,836,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21156,058,088 - 156,066,010 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,727,073 - 19,732,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,726,451 - 19,732,375 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605926,808,486 - 26,813,835 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenos
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247683,539,465 - 3,550,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247683,539,369 - 3,550,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SELENOS
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q26.2-26.3(chr15:94033008-101843270)x3 copy number gain See cases [RCV000050851] Chr15:94033008..101843270 [GRCh38]
Chr15:94576237..102383473 [GRCh37]
Chr15:92377241..100200996 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.1-26.3(chr15:89679237-101978958)x3 copy number gain See cases [RCV000052354] Chr15:89679237..101978958 [GRCh38]
Chr15:90222468..102519161 [GRCh37]
Chr15:88023472..100336684 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3		 pathogenic
GRCh38/hg38 15q24.3-26.3(chr15:77543797-101843411)x3 copy number gain See cases [RCV000052347] Chr15:77543797..101843411 [GRCh38]
Chr15:77836139..102383614 [GRCh37]
Chr15:75623194..100201137 [NCBI36]
Chr15:15q24.3-26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:84169153-101904929)x3 copy number gain See cases [RCV000052352] Chr15:84169153..101904929 [GRCh38]
Chr15:84837905..102445132 [GRCh37]
Chr15:82628909..100262655 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:96069425-101849578)x1 copy number loss See cases [RCV000053228] Chr15:96069425..101849578 [GRCh38]
Chr15:96612654..102389781 [GRCh37]
Chr15:94413658..100207304 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:96329791-101849578)x1 copy number loss See cases [RCV000053244] Chr15:96329791..101849578 [GRCh38]
Chr15:96873020..102389781 [GRCh37]
Chr15:94674024..100207304 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:96913979-101843411)x1 copy number loss See cases [RCV000053245] Chr15:96913979..101843411 [GRCh38]
Chr15:97457209..102383614 [GRCh37]
Chr15:95258213..100201137 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:97735430-101810992)x1 copy number loss See cases [RCV000053246] Chr15:97735430..101810992 [GRCh38]
Chr15:98278660..102351195 [GRCh37]
Chr15:96079664..100168718 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:98845807-101843270)x1 copy number loss See cases [RCV000053247] Chr15:98845807..101843270 [GRCh38]
Chr15:99389036..102383473 [GRCh37]
Chr15:97206559..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:98926805-101843270)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053248]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053248]|See cases [RCV000053248] Chr15:98926805..101843270 [GRCh38]
Chr15:99470034..102383473 [GRCh37]
Chr15:97287557..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:100126374-101843270)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053249]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053249]|See cases [RCV000053249] Chr15:100126374..101843270 [GRCh38]
Chr15:100666579..102383473 [GRCh37]
Chr15:98484102..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:100222791-101843270)x1 copy number loss See cases [RCV000053250] Chr15:100222791..101843270 [GRCh38]
Chr15:100762996..102383473 [GRCh37]
Chr15:98580519..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.1-26.3(chr15:93198717-101843270)x1 copy number loss See cases [RCV000133733] Chr15:93198717..101843270 [GRCh38]
Chr15:93741946..102383473 [GRCh37]
Chr15:91542950..100200996 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:101240570-101468912)x3 copy number gain See cases [RCV000134435] Chr15:101240570..101468912 [GRCh38]
Chr15:101780775..102009117 [GRCh37]
Chr15:99598298..99826640 [NCBI36]
Chr15:15q26.3		 benign
GRCh38/hg38 15q26.2-26.3(chr15:97014065-101843270)x1 copy number loss See cases [RCV000135397] Chr15:97014065..101843270 [GRCh38]
Chr15:97557295..102383473 [GRCh37]
Chr15:95358299..100200996 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:99155987-101843270)x1 copy number loss See cases [RCV000134969] Chr15:99155987..101843270 [GRCh38]
Chr15:99696192..102383473 [GRCh37]
Chr15:97513715..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:83711377-101843270)x3 copy number gain See cases [RCV000135858] Chr15:83711377..101843270 [GRCh38]
Chr15:84380129..102383473 [GRCh37]
Chr15:82171133..100200996 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:87904735-101843270)x3 copy number gain See cases [RCV000135568] Chr15:87904735..101843270 [GRCh38]
Chr15:88447966..102383473 [GRCh37]
Chr15:86248970..100200996 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:101170474-101474188)x3 copy number gain See cases [RCV000136485] Chr15:101170474..101474188 [GRCh38]
Chr15:101710679..102014393 [GRCh37]
Chr15:99528202..99831916 [NCBI36]
Chr15:15q26.3		 benign
GRCh38/hg38 15q26.3(chr15:100194660-101373649)x3 copy number gain See cases [RCV000135930] Chr15:100194660..101373649 [GRCh38]
Chr15:100734865..101913854 [GRCh37]
Chr15:98552388..99731377 [NCBI36]
Chr15:15q26.3		 pathogenic|uncertain significance
GRCh38/hg38 15q25.2-26.3(chr15:82859676-101810992)x3 copy number gain See cases [RCV000136849] Chr15:82859676..101810992 [GRCh38]
Chr15:83528428..102351195 [GRCh37]
Chr15:81325482..100168718 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:95770627-101810992)x1 copy number loss See cases [RCV000136864] Chr15:95770627..101810992 [GRCh38]
Chr15:96313856..102351195 [GRCh37]
Chr15:94114860..100168718 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:85826665-101920998)x4 copy number gain See cases [RCV000137264] Chr15:85826665..101920998 [GRCh38]
Chr15:86369896..102461201 [GRCh37]
Chr15:84170900..100278724 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:97941427-101797926)x1 copy number loss See cases [RCV000139666] Chr15:97941427..101797926 [GRCh38]
Chr15:98484657..102338129 [GRCh37]
Chr15:96285661..100155652 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:97172754-101920998)x1 copy number loss See cases [RCV000141263] Chr15:97172754..101920998 [GRCh38]
Chr15:97715984..102461201 [GRCh37]
Chr15:95516988..100278724 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.1-26.3(chr15:93041524-101941326)x3 copy number gain See cases [RCV000141431] Chr15:93041524..101941326 [GRCh38]
Chr15:93584754..102481529 [GRCh37]
Chr15:91385758..100299052 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:97283711-101920998)x3 copy number gain See cases [RCV000140658] Chr15:97283711..101920998 [GRCh38]
Chr15:97826941..102461201 [GRCh37]
Chr15:95627945..100278724 [NCBI36]
Chr15:15q26.2-26.3		 likely pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:85397539-101888909)x3 copy number gain See cases [RCV000141899] Chr15:85397539..101888909 [GRCh38]
Chr15:85940770..102429112 [GRCh37]
Chr15:83741774..100246635 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:101045648-101457911)x3 copy number gain See cases [RCV000143074] Chr15:101045648..101457911 [GRCh38]
Chr15:101585853..101998116 [GRCh37]
Chr15:99403376..99815639 [NCBI36]
Chr15:15q26.3		 likely benign
GRCh38/hg38 15q26.2-26.3(chr15:96024127-101920998)x1 copy number loss See cases [RCV000143088] Chr15:96024127..101920998 [GRCh38]
Chr15:96567356..102461201 [GRCh37]
Chr15:94368360..100278724 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:99338283-101843270)x3 copy number gain See cases [RCV000142579] Chr15:99338283..101843270 [GRCh38]
Chr15:99878488..102383473 [GRCh37]
Chr15:97696011..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:98467297-101843270)x1 copy number loss See cases [RCV000142728] Chr15:98467297..101843270 [GRCh38]
Chr15:99010526..102383473 [GRCh37]
Chr15:96828049..100200996 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:97681713-101920998)x1 copy number loss See cases [RCV000143176] Chr15:97681713..101920998 [GRCh38]
Chr15:98224943..102461201 [GRCh37]
Chr15:96025947..100278724 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.2-26.3(chr15:93805032-101326876)x1 copy number loss See cases [RCV000143687] Chr15:93805032..101326876 [GRCh38]
Chr15:94348261..101867081 [GRCh37]
Chr15:92149265..99684604 [NCBI36]
Chr15:15q26.2-26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:98280297-101888909)x3 copy number gain See cases [RCV000143526] Chr15:98280297..101888909 [GRCh38]
Chr15:98823526..102429112 [GRCh37]
Chr15:96641049..100246635 [NCBI36]
Chr15:15q26.3		 pathogenic
GRCh38/hg38 15q26.3(chr15:101138520-101293161)x1 copy number loss Premature ovarian failure [RCV000225152] Chr15:101138520..101293161 [GRCh38]
Chr15:101678725..101833366 [GRCh37]
Chr15:15q26.3		 benign
GRCh37/hg19 15q24.2-26.3(chr15:76061144-102429112)x3 copy number gain See cases [RCV000511332] Chr15:76061144..102429112 [GRCh37]
Chr15:15q24.2-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:98458265-102354857)x1 copy number loss See cases [RCV000239905] Chr15:98458265..102354857 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101645331-102263418)x3 copy number gain See cases [RCV000239911] Chr15:101645331..102263418 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q26.1-26.3(chr15:92197136-102354857)x1 copy number loss See cases [RCV000240535] Chr15:92197136..102354857 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3		 pathogenic
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3		 likely pathogenic
GRCh37/hg19 15q25.2-26.3(chr15:85089467-102495441)x3 copy number gain See cases [RCV000449119] Chr15:85089467..102495441 [GRCh37]
Chr15:15q25.2-26.3		 pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90346994-102354798) copy number loss See cases [RCV000447603] Chr15:90346994..102354798 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:95238218-102429112)x1 copy number loss See cases [RCV000446457] Chr15:95238218..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:89924847-102429112)x3 copy number gain See cases [RCV000445978] Chr15:89924847..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:94782891-102429112)x1 copy number loss See cases [RCV000445764] Chr15:94782891..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q25.1-26.3(chr15:80648093-102429112)x3 copy number gain See cases [RCV000445705] Chr15:80648093..102429112 [GRCh37]
Chr15:15q25.1-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:86148286-102511616)x3 copy number gain See cases [RCV000448044] Chr15:86148286..102511616 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
NC_000015.9:g.(?_100885379)_(102399948_?)dup duplication Schizophrenia [RCV000416623] Chr15:100885379..102399948 [GRCh37]
Chr15:98702902..100217471 [NCBI36]
Chr15:15q26.3		 likely pathogenic
GRCh37/hg19 15q26.3(chr15:98818228-102399760) copy number loss See cases [RCV000447813] Chr15:98818228..102399760 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:97223728-102429112)x1 copy number loss See cases [RCV000448857] Chr15:97223728..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:95136822-102045577)x1 copy number loss See cases [RCV000512141] Chr15:95136822..102045577 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101124214-102429112)x1 copy number loss See cases [RCV000510246] Chr15:101124214..102429112 [GRCh37]
Chr15:15q26.3		 likely benign
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:96913435-102429112)x1 copy number loss See cases [RCV000510663] Chr15:96913435..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101569237-102344434)x3 copy number gain See cases [RCV000511628] Chr15:101569237..102344434 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q26.1-26.3(chr15:93148806-102429112)x3 copy number gain See cases [RCV000511719] Chr15:93148806..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:100564922-102399548)x1 copy number loss See cases [RCV000511119] Chr15:100564922..102399548 [GRCh37]
Chr15:15q26.3		 uncertain significance
NM_018445.6(SELENOS):c.52G>C (p.Gly18Arg) single nucleotide variant Inborn genetic diseases [RCV003292611] Chr15:101277366 [GRCh38]
Chr15:101817571 [GRCh37]
Chr15:15q26.3		 uncertain significance
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:98220018-102429112)x1 copy number loss See cases [RCV000512353] Chr15:98220018..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101238481-102429112)x1 copy number loss See cases [RCV000512205] Chr15:101238481..102429112 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q26.3(chr15:98737093-102429112)x1 copy number loss See cases [RCV000512437] Chr15:98737093..102429112 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:100526020-102429112)x1 copy number loss not provided [RCV000683730] Chr15:100526020..102429112 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q26.1-26.3(chr15:89743929-102429112)x3 copy number gain not provided [RCV000683718] Chr15:89743929..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:99928623-102429112)x3 copy number gain not provided [RCV000683726] Chr15:99928623..102429112 [GRCh37]
Chr15:15q26.3		 likely pathogenic
GRCh37/hg19 15q23-26.3(chr15:71329220-102270758)x3 copy number gain not provided [RCV000683703] Chr15:71329220..102270758 [GRCh37]
Chr15:15q23-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101734079-102429112)x3 copy number gain not provided [RCV000683736] Chr15:101734079..102429112 [GRCh37]
Chr15:15q26.3		 likely benign|uncertain significance
GRCh37/hg19 15q26.3(chr15:101595256-101899130)x3 copy number gain not provided [RCV000683735] Chr15:101595256..101899130 [GRCh37]
Chr15:15q26.3		 likely benign
GRCh37/hg19 15q24.3-26.3(chr15:77479244-102429112)x3 copy number gain not provided [RCV000683710] Chr15:77479244..102429112 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:88385150-102461162)x3 copy number gain not provided [RCV000738864] Chr15:88385150..102461162 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90277151-102376761)x3 copy number gain not provided [RCV000751387] Chr15:90277151..102376761 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:96878099-102397836)x1 copy number loss Chromosome 15q26-qter deletion syndrome [RCV000993689] Chr15:96878099..102397836 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
NM_018445.6(SELENOS):c.360C>T (p.Asp120=) single nucleotide variant not provided [RCV000965311] Chr15:101274640 [GRCh38]
Chr15:101814845 [GRCh37]
Chr15:15q26.3		 benign
NM_018445.6(SELENOS):c.459G>A (p.Ser153=) single nucleotide variant not provided [RCV000966439] Chr15:101274445 [GRCh38]
Chr15:101814650 [GRCh37]
Chr15:15q26.3		 benign
GRCh37/hg19 15q26.2-26.3(chr15:96873212-102389423) copy number loss not provided [RCV000767761] Chr15:96873212..102389423 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90288175-102429112)x3 copy number gain not provided [RCV000846885] Chr15:90288175..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101696490-102311245)x3 copy number gain not provided [RCV000848225] Chr15:101696490..102311245 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q26.3(chr15:101781933-102133671)x3 copy number gain not provided [RCV000849379] Chr15:101781933..102133671 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q25.3-26.3(chr15:87189245-102429112)x1 copy number loss not provided [RCV001006718] Chr15:87189245..102429112 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:98686212-102429112)x1 copy number loss not provided [RCV001006729] Chr15:98686212..102429112 [GRCh37]
Chr15:15q26.3		 pathogenic
NM_018445.6(SELENOS):c.525C>T (p.Ser175=) single nucleotide variant not provided [RCV000930427] Chr15:101272816 [GRCh38]
Chr15:101813021 [GRCh37]
Chr15:15q26.3		 likely benign
NM_018445.6(SELENOS):c.389G>T (p.Gly130Val) single nucleotide variant not provided [RCV000957344] Chr15:101274611 [GRCh38]
Chr15:101814816 [GRCh37]
Chr15:15q26.3		 benign
GRCh37/hg19 15q26.3(chr15:98795669-102429112)x1 copy number loss not provided [RCV001006730] Chr15:98795669..102429112 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101683593-102270458)x3 copy number gain not provided [RCV001259823] Chr15:101683593..102270458 [GRCh37]
Chr15:15q26.3		 likely benign
GRCh37/hg19 15q26.2-26.3(chr15:98275761-102358202)x1 copy number loss not provided [RCV001259819] Chr15:98275761..102358202 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:100853021-102429112)x1 copy number loss not provided [RCV001259829] Chr15:100853021..102429112 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q25.3-26.3(chr15:86962053-102531392)x1 copy number loss See cases [RCV001263026] Chr15:86962053..102531392 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:92335751-102399741)x1 copy number loss not provided [RCV001537887] Chr15:92335751..102399741 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101783340-102429112)x3 copy number gain not provided [RCV001832991] Chr15:101783340..102429112 [GRCh37]
Chr15:15q26.3		 likely benign
GRCh37/hg19 15q26.2-26.3(chr15:97026327-102429112) copy number loss not specified [RCV002052490] Chr15:97026327..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:99258367-102429112) copy number loss not specified [RCV002052494] Chr15:99258367..102429112 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.2-26.3(chr15:97223728-102429112) copy number loss not specified [RCV002052491] Chr15:97223728..102429112 [GRCh37]
Chr15:15q26.2-26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:101659856-102429112)x3 copy number gain not provided [RCV001827780] Chr15:101659856..102429112 [GRCh37]
Chr15:15q26.3		 likely benign|uncertain significance
GRCh37/hg19 15q24.3-26.3(chr15:77512817-102035027)x3 copy number gain not provided [RCV002475797] Chr15:77512817..102035027 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
NM_018445.6(SELENOS):c.53G>A (p.Gly18Glu) single nucleotide variant Inborn genetic diseases [RCV003192927] Chr15:101277365 [GRCh38]
Chr15:101817570 [GRCh37]
Chr15:15q26.3		 uncertain significance
GRCh37/hg19 15q25.2-26.3(chr15:84228005-102264590)x3 copy number gain not provided [RCV003222840] Chr15:84228005..102264590 [GRCh37]
Chr15:15q25.2-26.3		 pathogenic
GRCh37/hg19 15q24.1-26.3(chr15:75165490-102520892)x3 copy number gain See cases [RCV003329502] Chr15:75165490..102520892 [GRCh37]
Chr15:15q24.1-26.3		 pathogenic
Single allele deletion not provided [RCV003448683] Chr15:98565904..102400021 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.3(chr15:98679543-102429112)x1 copy number loss not specified [RCV003987093] Chr15:98679543..102429112 [GRCh37]
Chr15:15q26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:94176550-102429112)x3 copy number gain not specified [RCV003987113] Chr15:94176550..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1764
Count of miRNA genes:874
Interacting mature miRNAs:1014
Transcripts:ENST00000398226, ENST00000526043, ENST00000526049, ENST00000527833, ENST00000528346, ENST00000529968, ENST00000531964, ENST00000534014, ENST00000537379
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH46969  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3715101,812,542 - 101,812,664UniSTSGRCh37
Build 361599,630,065 - 99,630,187RGDNCBI36
Celera1578,225,387 - 78,225,509RGD
Cytogenetic Map15q26.3UniSTS
HuRef1577,934,951 - 77,935,073UniSTS
GeneMap99-GB4 RH Map15352.05UniSTS
NCBI RH Map15733.7UniSTS
RH101959  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3715101,811,048 - 101,811,187UniSTSGRCh37
Build 361599,628,571 - 99,628,710RGDNCBI36
Celera1578,223,893 - 78,224,032RGD
Cytogenetic Map15q26.3UniSTS
HuRef1577,933,457 - 77,933,596UniSTS
GeneMap99-GB4 RH Map15352.26UniSTS
SHGC-146438  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q26.3UniSTS
HuRef1577,938,243 - 77,938,524UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2439 2367 1707 611 1376 452 4343 2090 3218 404 1458 1611 175 1 1204 2774 6 2
Low 624 19 13 575 13 14 107 516 15 2 2 14
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA487772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC023024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF157317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF328864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI673590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY324824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY618665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG829960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI494034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ014190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU740863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ578816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DW430970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000398226   ⟹   ENSP00000381282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,270,817 - 101,277,450 (-)Ensembl
RefSeq Acc Id: ENST00000526043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,272,190 - 101,277,471 (-)Ensembl
RefSeq Acc Id: ENST00000526049   ⟹   ENSP00000433541
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,272,191 - 101,277,485 (-)Ensembl
RefSeq Acc Id: ENST00000527833
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,274,168 - 101,277,441 (-)Ensembl
RefSeq Acc Id: ENST00000528346   ⟹   ENSP00000434842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,272,806 - 101,277,287 (-)Ensembl
RefSeq Acc Id: ENST00000529968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,275,100 - 101,277,500 (-)Ensembl
RefSeq Acc Id: ENST00000531964   ⟹   ENSP00000433803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,271,417 - 101,277,314 (-)Ensembl
RefSeq Acc Id: ENST00000534014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl15101,276,433 - 101,277,453 (-)Ensembl
RefSeq Acc Id: NM_018445   ⟹   NP_060915
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3815101,272,191 - 101,277,485 (-)NCBI
GRCh3715101,811,214 - 101,817,700 (-)ENTREZGENE
Build 361599,629,913 - 99,635,223 (-)NCBI Archive
HuRef1577,933,523 - 77,940,134 (-)NCBI
CHM1_115101,653,373 - 101,658,711 (-)NCBI
T2T-CHM13v2.01599,027,223 - 99,032,517 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203472   ⟹   NP_982298
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3815101,270,809 - 101,277,485 (-)NCBI
GRCh3715101,811,214 - 101,817,700 (-)ENTREZGENE
Build 361599,628,737 - 99,635,223 (-)NCBI Archive
HuRef1577,933,523 - 77,940,134 (-)NCBI
CHM1_115101,652,100 - 101,658,711 (-)NCBI
T2T-CHM13v2.01599,025,841 - 99,032,517 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_982298   ⟸   NM_203472
- Peptide Label: isoform 2
- UniProtKB: Q6GYA4 (UniProtKB/TrEMBL),   A0A182DWI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060915   ⟸   NM_018445
- Peptide Label: isoform 1
- UniProtKB: Q3B771 (UniProtKB/Swiss-Prot),   Q9P0I6 (UniProtKB/Swiss-Prot),   Q9BQE4 (UniProtKB/Swiss-Prot),   A0A182DWI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000381282   ⟸   ENST00000398226
RefSeq Acc Id: ENSP00000433803   ⟸   ENST00000531964
RefSeq Acc Id: ENSP00000433541   ⟸   ENST00000526049
RefSeq Acc Id: ENSP00000434842   ⟸   ENST00000528346

Promoters
RGD ID:6792591
Promoter ID:HG_KWN:22488
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_018445,   NM_203472
Position:
Human AssemblyChrPosition (strand)Source
Build 361599,635,106 - 99,636,032 (-)MPROMDB
RGD ID:7230693
Promoter ID:EPDNEW_H21092
Type:initiation region
Name:VIMP_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3815101,277,474 - 101,277,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30396 AgrOrtholog
COSMIC SELENOS COSMIC
Ensembl Genes ENSG00000131871 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000398226 ENTREZGENE
  ENST00000398226.7 UniProtKB/Swiss-Prot
  ENST00000526049 ENTREZGENE
  ENST00000526049.6 UniProtKB/Swiss-Prot
  ENST00000528346.1 UniProtKB/TrEMBL
  ENST00000531964.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2950 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000131871 GTEx
HGNC ID HGNC:30396 ENTREZGENE
Human Proteome Map SELENOS Human Proteome Map
InterPro Selenoprotein_S UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55829 UniProtKB/Swiss-Prot
NCBI Gene 55829 ENTREZGENE
OMIM 607918 OMIM
PANTHER PTHR28621 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SELENOPROTEIN S UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Selenoprotein_S UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA166048999 PharmGKB
UniProt A0A182DWI4 ENTREZGENE, UniProtKB/TrEMBL
  E9PN30_HUMAN UniProtKB/TrEMBL
  Q3B771 ENTREZGENE
  Q6GYA4 ENTREZGENE, UniProtKB/TrEMBL
  Q9BQE4 ENTREZGENE
  Q9P0I6 ENTREZGENE
  SELS_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q3B771 UniProtKB/Swiss-Prot
  Q9P0I6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-27 SELENOS  selenoprotein S  VIMP  VCP interacting membrane selenoprotein  Symbol and/or name change 5135510 APPROVED
2016-01-19 VIMP  VCP interacting membrane selenoprotein  VIMP  VCP-interacting membrane selenoprotein  Symbol and/or name change 5135510 APPROVED
2015-04-28 VIMP  VCP-interacting membrane selenoprotein  VIMP  VCP-interacting membrane protein  Symbol and/or name change 5135510 APPROVED
2012-06-05 VIMP  VCP-interacting membrane protein  SELS  selenoprotein S  Symbol and/or name change 5135510 APPROVED