Cyp3a71-ps (cytochrome P450, family 3, subfamily a, polypeptide 71, pseudogene) - Rat Genome Database

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Gene: Cyp3a71-ps (cytochrome P450, family 3, subfamily a, polypeptide 71, pseudogene) Rattus norvegicus
Analyze
Symbol: Cyp3a71-ps
Name: cytochrome P450, family 3, subfamily a, polypeptide 71, pseudogene
RGD ID: 1597309
Description: INTERACTS WITH tetrachloromethane
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome P450 3A1-like; cytochrome P450 3A2-like; LOC690383; similar to Cytochrome P450 3A2 (CYPIIIA2) (P450-PCN2) (P450/6-beta-A) (Testosterone 6-beta-hydroxylase)
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,243,100 - 14,265,004 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2129,136,318 - 9,151,198 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01210,898,529 - 10,931,152 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01212,994,830 - 13,049,008 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,414,418 - 9,467,776 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1210,961,022 - 10,975,256 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in Cyp3a71-ps
356 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 20 7 32 67 584 570 41 558 6 556 12 793 114 7 50 156 121 12 11 11

Sequence


RefSeq Acc Id: XM_063271907   ⟹   XP_063127977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,243,100 - 14,265,004 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063127977 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063127977   ⟸   XM_063271907


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20069 BioCyc
NCBI Gene 690383 ENTREZGENE
PhenoGen Cyp3a71-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-07-06 Cyp3a71-ps  cytochrome P450, family 3, subfamily a, polypeptide 71, pseudogene  LOC690383  similar to Cytochrome P450 3A2 (CYPIIIA2) (P450-PCN2) (P450/6-beta-A) (Testosterone 6-beta-hydroxylase)  Name updated 1299863 APPROVED
2006-11-20 LOC690383  similar to Cytochrome P450 3A2 (CYPIIIA2) (P450-PCN2) (P450/6-beta-A) (Testosterone 6-beta-hydroxylase)      Symbol and Name status set to provisional 70820 PROVISIONAL