Rplp1l3 (ribosomal protein lateral stalk subunit P1 like 3) - Rat Genome Database

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Gene: Rplp1l3 (ribosomal protein lateral stalk subunit P1 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rplp1l3 (Ensembl: LOC690507)
Name: ribosomal protein lateral stalk subunit P1 like 3 (Ensembl:similar to Vomeromodulin)
RGD ID: 1594746
Description: Predicted to be involved in sensory perception of smell. Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BPI fold containing family B, member 5; BPI fold-containing family B member 9; Bpifb5; Bpifb9; hypothetical protein LOC686891; LOC690507; similar to Vomeromodulin; vomeromodulin
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,216,695 - 163,230,483 (+)NCBIGRCr8
mRatBN7.23142,756,538 - 142,770,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,756,202 - 142,816,002 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03149,798,468 - 149,812,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,802,621 - 149,812,183 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,176,820 - 156,184,807 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,723,203 - 144,733,928 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
Additional References at PubMed
PMID:1752363   PMID:10049729   PMID:21787333  


Genomics

Variants

.
Variants in Rplp1l3
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:156
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000020968, ENSRNOT00000063922, ENSRNOT00000071772
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1
Low 2 2 20 4 16 4 8 8 10 10 13 10 8
Below cutoff 32 15 15 3 15 3 11 9 15 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071772   ⟹   ENSRNOP00000065522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,316 - 142,816,002 (+)Ensembl
Rnor_6.0 Ensembl3149,802,621 - 149,812,183 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095124   ⟹   ENSRNOP00000079159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,209 - 142,816,002 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096257   ⟹   ENSRNOP00000087496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,202 - 142,816,002 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097783   ⟹   ENSRNOP00000078747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,202 - 142,770,337 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100176   ⟹   ENSRNOP00000082366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,202 - 142,816,002 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112442   ⟹   ENSRNOP00000094792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,756,202 - 142,816,002 (+)Ensembl
RefSeq Acc Id: NM_001419710   ⟹   NP_001406639
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83163,216,695 - 163,230,483 (+)NCBI
mRatBN7.23142,756,538 - 142,770,325 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001406639 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065522.2
  ENSRNOP00000078747
  ENSRNOP00000078747.1
  ENSRNOP00000087496.1
  ENSRNOP00000094792.1
GenBank Protein Q63751 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000065522   ⟸   ENSRNOT00000071772
RefSeq Acc Id: ENSRNOP00000079159   ⟸   ENSRNOT00000095124
RefSeq Acc Id: ENSRNOP00000094792   ⟸   ENSRNOT00000112442
RefSeq Acc Id: ENSRNOP00000078747   ⟸   ENSRNOT00000097783
RefSeq Acc Id: ENSRNOP00000082366   ⟸   ENSRNOT00000100176
RefSeq Acc Id: ENSRNOP00000087496   ⟸   ENSRNOT00000096257
RefSeq Acc Id: NP_001406639   ⟸   NM_001419710
- Peptide Label: precursor
- UniProtKB: A0A8I5ZP52 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63751-F1-model_v2 AlphaFold Q63751 1-589 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594746 AgrOrtholog
BioCyc Gene G2FUF-47183 BioCyc
Ensembl Genes ENSRNOG00000015637 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071772.3 UniProtKB/TrEMBL
  ENSRNOT00000096257.1 UniProtKB/TrEMBL
  ENSRNOT00000097783 ENTREZGENE
  ENSRNOT00000097783.1 UniProtKB/TrEMBL
  ENSRNOT00000112442.1 UniProtKB/TrEMBL
InterPro Vomeromodulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 690507 ENTREZGENE
PANTHER BPI FOLD-CONTAINING FAMILY B, MEMBER 9B-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR40142 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rplp1l3 PhenoGen
RatGTEx ENSRNOG00000015637 RatGTEx
UniProt A0A8I5ZP52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A833_RAT UniProtKB/TrEMBL
  A0A8I6AMV8_RAT UniProtKB/TrEMBL
  M0R7T8_RAT UniProtKB/TrEMBL
  Q63751 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q05703 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rplp1l3  ribosomal protein lateral stalk subunit P1 like 3  Rplp1l1  ribosomal protein lateral stalk subunit P1 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rplp1l1  ribosomal protein lateral stalk subunit P1 like 1  LOC690507  similar to Vomeromodulin  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC690507  similar to Vomeromodulin  LOC686891  hypothetical protein LOC686891  Data merged from RGD:1592467 1643240 APPROVED
2011-08-16 LOC690507  similar to Vomeromodulin  Bpifb5  BPI fold containing family B, member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Bpifb5  BPI fold containing family B, member 5  LOC690507  similar to Vomeromodulin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690507  similar to Vomeromodulin      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686891  hypothetical protein LOC686891      Symbol and Name status set to provisional 70820 PROVISIONAL