Hspa8-ps23 (heat shock protein family A (Hsp70) member 8, pseudogene 23) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hspa8-ps23 (heat shock protein family A (Hsp70) member 8, pseudogene 23) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Hspa8-ps23
Name: heat shock protein family A (Hsp70) member 8, pseudogene 23
RGD ID: 1582975
Description: Predicted to enable ATP binding activity and ATP-dependent protein folding chaperone. Predicted to be involved in clathrin coat disassembly and gene expression. Predicted to be part of spliceosomal complex.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC688932; similar to heat shock protein 8
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X36,166,923 - 36,170,616 (-)NCBIGRCr8
mRatBN7.2X32,535,167 - 32,537,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX32,535,155 - 32,537,257 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X34,295,222 - 34,297,330 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX34,295,302 - 34,297,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X34,639,074 - 34,641,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X53,303,694 - 53,305,768 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX32,826,897 - 32,829,005 (-)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Hspa8-ps23
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000041740
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 4 1 1 4 1 8 1 1
Below cutoff 3 37 44 30 15 30 7 10 68 34 32 10 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX32,535,155 - 32,537,257 (-)Ensembl
Rnor_6.0 EnsemblX34,295,302 - 34,297,243 (-)Ensembl
RefSeq Acc Id: XR_086368
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X32,535,167 - 32,537,203 (-)NCBI
Rnor_6.0X34,295,222 - 34,297,330 (-)NCBI
Rnor_5.0X34,639,074 - 34,641,170 (-)NCBI
RGSC_v3.4X53,303,694 - 53,305,768 (-)RGD
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000096535.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2523 BioCyc
Ensembl Genes ENSRNOG00000030228 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041740.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/TrEMBL
  3.30.30.30 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
NCBI Gene 688932 ENTREZGENE
PANTHER HEAT SHOCK COGNATE 71 KDA PROTEIN UniProtKB/TrEMBL
  PTHR19375 UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
PhenoGen Hspa8-ps23 PhenoGen
PRINTS HEATSHOCK70 UniProtKB/TrEMBL
PROSITE HSP70_2 UniProtKB/TrEMBL
  HSP70_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030228 RatGTEx
Superfamily-SCOP SSF100920 UniProtKB/TrEMBL
  SSF100934 UniProtKB/TrEMBL
  SSF53067 UniProtKB/TrEMBL
UniProt A0A8I6AQL9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hspa8-ps23  heat shock protein family A (Hsp70) member 8, pseudogene 23  LOC688932  similar to heat shock protein 8  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC688932  similar to heat shock protein 8      Symbol and Name status set to provisional 70820 PROVISIONAL