Mrps11-ps1 (mitochondrial ribosomal protein S11, pseudogene 1) - Rat Genome Database

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Gene: Mrps11-ps1 (mitochondrial ribosomal protein S11, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Mrps11-ps1
Name: mitochondrial ribosomal protein S11, pseudogene 1
RGD ID: 1582842
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC690271; similar to mitochondrial ribosomal protein S11
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,939,657 - 95,941,275 (-)NCBIGRCr8
mRatBN7.21393,407,887 - 93,409,927 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01399,980,813 - 99,982,406 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013104,965,618 - 104,967,119 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41397,700,927 - 97,702,233 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,948,166 - 92,949,759 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Variants

.
Variants in Mrps11-ps1
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
BI280319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,407,980 - 93,408,202 (+)MAPPERmRatBN7.2
mRatBN7.21132,716,923 - 132,717,135 (+)MAPPERmRatBN7.2
Rnor_6.01140,486,919 - 140,487,130NCBIRnor6.0
Rnor_6.01399,980,927 - 99,981,146NCBIRnor6.0
Rnor_5.013104,965,666 - 104,965,885UniSTSRnor5.0
Rnor_5.01141,462,470 - 141,462,681UniSTSRnor5.0
RGSC_v3.41134,516,893 - 134,517,104UniSTSRGSC3.4
RGSC_v3.41397,700,802 - 97,701,021UniSTSRGSC3.4
Celera1392,948,280 - 92,948,499UniSTS
Celera1124,788,215 - 124,788,426UniSTS
RH 3.4 Map11048.79UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map13q26UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003751289   ⟹   XP_003751337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.013104,965,618 - 104,967,119 (-)NCBI
RefSeq Acc Id: XM_003752685   ⟹   XP_003752733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1392,948,233 - 92,949,733 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-17091 BioCyc
NCBI Gene 690271 ENTREZGENE
PhenoGen Mrps11-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Mrps11-ps1  mitochondrial ribosomal protein S11, pseudogene 1  LOC690271  similar to mitochondrial ribosomal protein S11  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC690271  similar to mitochondrial ribosomal protein S11      Symbol and Name status set to provisional 70820 PROVISIONAL