Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | SPIB (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | SPIB (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Spib (Rattus norvegicus - Norway rat) |
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SPIB (Homo sapiens - human) |
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Spib (Mus musculus - house mouse) |
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Spib (Chinchilla lanigera - long-tailed chinchilla) |
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SPIB (Pan paniscus - bonobo/pygmy chimpanzee) |
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MYBPC2 (Canis lupus familiaris - dog) |
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SPIB (Sus scrofa - pig) |
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Spib (Heterocephalus glaber - naked mole-rat) |
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Variants in Spib
18 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 6 | 17 | 3 | |||||||||
Low | 1 | 24 | 19 | 2 | 19 | 1 | 1 | 1 | 21 | 13 | 8 | 1 | |
Below cutoff | 36 | 25 | 20 | 20 | 7 | 10 | 43 | 14 | 28 | 7 |
RefSeq Transcripts | NM_001024286 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006229111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006229112 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006229113 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006229114 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006229115 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008759404 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008759405 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087388 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087403 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087404 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087412 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270967 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270969 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270971 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270972 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270973 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC089881 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
FQ230922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ232813 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ235143 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000001 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000026599 ⟹ ENSRNOP00000026599 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000102341 ⟹ ENSRNOP00000091947 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000103664 ⟹ ENSRNOP00000093406 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001024286 ⟹ NP_001019457 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006229111 ⟹ XP_006229173 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006229112 ⟹ XP_006229174 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006229113 ⟹ XP_006229175 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006229114 ⟹ XP_006229176 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006229115 ⟹ XP_006229177 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008759404 ⟹ XP_008757626 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039087388 ⟹ XP_038943316 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039087403 ⟹ XP_038943331 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039087404 ⟹ XP_038943332 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039087406 ⟹ XP_038943334 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039087412 ⟹ XP_038943340 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063270967 ⟹ XP_063127037 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270968 ⟹ XP_063127038 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270969 ⟹ XP_063127039 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270970 ⟹ XP_063127040 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270971 ⟹ XP_063127041 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270972 ⟹ XP_063127042 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270973 ⟹ XP_063127043 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270975 ⟹ XP_063127045 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001019457 | (Get FASTA) | NCBI Sequence Viewer |
XP_006229173 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006229174 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006229175 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006229176 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006229177 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008757626 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038943316 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038943331 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038943332 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038943334 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038943340 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127037 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127038 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127039 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127040 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127041 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127042 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127043 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127045 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH89881 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000026599 | ||
ENSRNOP00000026599.7 | |||
ENSRNOP00000091947 | |||
ENSRNOP00000091947.1 | |||
ENSRNOP00000093406 | |||
ENSRNOP00000093406.1 | |||
GenBank Protein | Q5EBA3 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001019457 ⟸ NM_001024286 |
- UniProtKB: | Q5EBA3 (UniProtKB/Swiss-Prot), A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006229177 ⟸ XM_006229115 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006229174 ⟸ XM_006229112 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006229176 ⟸ XM_006229114 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6AKC1 (UniProtKB/TrEMBL), A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006229173 ⟸ XM_006229111 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006229175 ⟸ XM_006229113 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008757626 ⟸ XM_008759404 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000026599 ⟸ ENSRNOT00000026599 |
RefSeq Acc Id: | XP_038943334 ⟸ XM_039087406 |
- Peptide Label: | isoform X17 |
RefSeq Acc Id: | XP_038943340 ⟸ XM_039087412 |
- Peptide Label: | isoform X18 |
RefSeq Acc Id: | XP_038943331 ⟸ XM_039087403 |
- Peptide Label: | isoform X11 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038943316 ⟸ XM_039087388 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A140TAD6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038943332 ⟸ XM_039087404 |
- Peptide Label: | isoform X15 |
RefSeq Acc Id: | ENSRNOP00000091947 ⟸ ENSRNOT00000102341 |
RefSeq Acc Id: | ENSRNOP00000093406 ⟸ ENSRNOT00000103664 |
RefSeq Acc Id: | XP_063127039 ⟸ XM_063270969 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_063127041 ⟸ XM_063270971 |
- Peptide Label: | isoform X13 |
RefSeq Acc Id: | XP_063127043 ⟸ XM_063270973 |
- Peptide Label: | isoform X16 |
RefSeq Acc Id: | XP_063127045 ⟸ XM_063270975 |
- Peptide Label: | isoform X19 |
RefSeq Acc Id: | XP_063127042 ⟸ XM_063270972 |
- Peptide Label: | isoform X14 |
RefSeq Acc Id: | XP_063127037 ⟸ XM_063270967 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063127038 ⟸ XM_063270968 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_063127040 ⟸ XM_063270970 |
- Peptide Label: | isoform X12 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5EBA3-F1-model_v2 | AlphaFold | Q5EBA3 | 1-269 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13690000 | ||||||||
Promoter ID: | EPDNEW_R525 | ||||||||
Type: | single initiation site | ||||||||
Name: | Spib_1 | ||||||||
Description: | Spi-B transcription factor | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1565899 | AgrOrtholog |
BioCyc Gene | G2FUF-59764 | BioCyc |
Ensembl Genes | ENSRNOG00000019660 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000026599 | ENTREZGENE |
ENSRNOT00000026599.7 | UniProtKB/TrEMBL | |
ENSRNOT00000102341.1 | UniProtKB/TrEMBL | |
ENSRNOT00000103664.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7368473 | IMAGE-MGC_LOAD |
InterPro | Ets_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ETS_fam | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
WH-like_DNA-bd_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
WH_DNA-bd_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:499146 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:109046 | IMAGE-MGC_LOAD |
NCBI Gene | 499146 | ENTREZGENE |
PANTHER | PTHR11849 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TRANSCRIPTION FACTOR SPI-B | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Ets | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Spib | PhenoGen |
PRINTS | ETSDOMAIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | ETS_DOMAIN_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ETS_DOMAIN_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ETS_DOMAIN_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000019660 | RatGTEx |
SMART | ETS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF46785 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A140TAD6 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AGK6_RAT | UniProtKB/TrEMBL | |
A0A8I6AKC1 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5EBA3 | ENTREZGENE, UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-03-16 | Spib | Spi-B transcription factor | Spib | Spi-B transcription factor (Spi-1/PU.1 related) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-06 | Spib | Spi-B transcription factor (Spi-1/PU.1 related) | MGC109046 | similar to Transcription factor Spi-B | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-02-09 | MGC109046 | similar to Transcription factor Spi-B | Symbol and Name status set to provisional | 70820 | PROVISIONAL |