4932415M13Rikl (RIKEN cDNA 4932415M13 gene like) - Rat Genome Database

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Gene: 4932415M13Rikl (RIKEN cDNA 4932415M13 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 4932415M13Rikl
Name: RIKEN cDNA 4932415M13 gene like (Ensembl:like)
RGD ID: 1564986
Description: Predicted to enable protein serine/threonine kinase activity.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC301165; LOC100359586; LOC301165; MGC114490; putative sperm motility kinase W; serine/threonine-protein kinase MARK2-like; similar to hypothetical protein 4932415M13; uncharacterized protein LOC301165
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,944,600 - 6,966,705 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl97,351,410 - 7,362,366 (+)EnsemblGRCr8
mRatBN7.296,707,991 - 6,732,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl96,708,011 - 6,730,700 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxPNT010000434.125,505 - 43,311 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0913,823,030 - 13,840,836 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0912,577,170 - 12,594,975 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd98,545,825 - 8,563,638 (+)NCBI
Lyon_Normotensive98,382,021 - 8,399,833 (-)NCBI
Lyon_Hypertensive98,609,581 - 8,627,393 (+)NCBI
F344_StmMcwi910,769,015 - 10,786,845 (-)NCBI
Rnor_6.094,731,989 - 4,741,552 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl94,377,209 - 4,393,213 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.093,772,184 - 3,781,747 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49831,904 - 833,828 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Cytogenetic Map9q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Variants

.
Variants in 4932415M13Rikl
580 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:132
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000072923
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9360535521031556Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
10 7 9 42 70 64 83 26 17 45 17 16 203 131 8 57 1 43 99 67 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000061893   ⟹   ENSRNOP00000058608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl96,708,011 - 6,730,700 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072923   ⟹   ENSRNOP00000064208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl97,351,410 - 7,362,366 (+)Ensembl
mRatBN7.2 Ensembl96,708,053 - 6,725,883 (+)Ensembl
Rnor_6.0 Ensembl94,377,209 - 4,393,213 (-)Ensembl
RefSeq Acc Id: NR_172061
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,653 - 6,962,483 (+)NCBI
mRatBN7.296,708,053 - 6,725,883 (+)NCBI
Dahl_SR_JrHsd98,545,825 - 8,563,638 (+)NCBI
Lyon_Normotensive98,382,021 - 8,399,833 (-)NCBI
Lyon_Hypertensive98,609,581 - 8,627,393 (+)NCBI
F344_StmMcwi910,769,015 - 10,786,845 (-)NCBI
RefSeq Acc Id: XR_008934173
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,962,483 (+)NCBI
mRatBN7.296,707,991 - 6,725,883 (+)NCBI
RefSeq Acc Id: XR_008934175
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,966,705 (+)NCBI
mRatBN7.296,707,991 - 6,732,613 (+)NCBI
RefSeq Acc Id: XR_008934176
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,962,483 (+)NCBI
mRatBN7.296,707,991 - 6,725,883 (+)NCBI
RefSeq Acc Id: XR_008934178
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,962,483 (+)NCBI
mRatBN7.296,707,991 - 6,725,883 (+)NCBI
RefSeq Acc Id: XR_010054573
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,962,483 (+)NCBI
RefSeq Acc Id: XR_010054574
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,960,630 (+)NCBI
RefSeq Acc Id: XR_010054575
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,944,600 - 6,962,483 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000064208.3
Ensembl Acc Id: ENSRNOP00000064208   ⟸   ENSRNOT00000072923
Ensembl Acc Id: ENSRNOP00000058608   ⟸   ENSRNOT00000061893
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4C6-F1-model_v2 AlphaFold M0R4C6 1-509 view protein structure
AF-E9PSM2-F1-model_v2 AlphaFold E9PSM2 1-512 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564986 AgrOrtholog
BioCyc Gene G2FUF-28392 BioCyc
Ensembl Genes ENSRNOG00000046714 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072923.3 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7455751 IMAGE-MGC_LOAD
InterPro Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
MGC_CLONE MGC:114490 IMAGE-MGC_LOAD
NCBI Gene 301165 ENTREZGENE
PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/TrEMBL
  RIKEN CDNA 1810024B03 GENE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen 4932415M13Rikl PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046714 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt M0R4C6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 4932415M13Rikl  RIKEN cDNA 4932415M13 gene like  LOC301165  similar to hypothetical protein 4932415M13  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC301165  similar to hypothetical protein 4932415M13  LOC100359586  serine/threonine-protein kinase MARK2-like  Data merged from RGD:2323608 737654 PROVISIONAL
2010-05-06 LOC100359586  serine/threonine-protein kinase MARK2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 LOC301165  similar to hypothetical protein 4932415M13      Symbol and Name status set to provisional 70820 PROVISIONAL