Kbtbd11 (kelch repeat and BTB domain containing 11) - Rat Genome Database

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Gene: Kbtbd11 (kelch repeat and BTB domain containing 11) Rattus norvegicus
Analyze
Symbol: Kbtbd11
Name: kelch repeat and BTB domain containing 11
RGD ID: 1563576
Description: Orthologous to human KBTBD11 (kelch repeat and BTB domain containing 11); INTERACTS WITH 17alpha-ethynylestradiol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: kelch repeat and BTB (POZ) domain containing 11; kelch repeat and BTB domain-containing protein 11; LOC306617; RGD1563576; similar to mKIAA0711 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81681,318,596 - 81,340,334 (-)NCBIGRCr8
mRatBN7.21674,618,291 - 74,638,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1674,615,792 - 74,637,736 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1679,896,353 - 79,900,451 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01683,349,924 - 83,354,022 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01678,599,383 - 78,603,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01679,696,395 - 79,716,129 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,696,891 - 79,700,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,273,008 - 79,292,584 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,428,762 - 79,432,863 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1672,436,737 - 72,440,838 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
menadione  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
niclosamide  (ISO)
panobinostat  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
succimer  (ISO)
temozolomide  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Kbtbd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81681,318,596 - 81,340,334 (-)NCBIGRCr8
mRatBN7.21674,618,291 - 74,638,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1674,615,792 - 74,637,736 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1679,896,353 - 79,900,451 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01683,349,924 - 83,354,022 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01678,599,383 - 78,603,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01679,696,395 - 79,716,129 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,696,891 - 79,700,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,273,008 - 79,292,584 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,428,762 - 79,432,863 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1672,436,737 - 72,440,838 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
KBTBD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3881,973,677 - 2,006,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl81,973,677 - 2,006,936 (+)EnsemblGRCh38hg38GRCh38
GRCh3781,921,843 - 1,955,102 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3681,909,451 - 1,942,509 (+)NCBINCBI36Build 36hg18NCBI36
Celera81,864,864 - 1,897,747 (+)NCBICelera
Cytogenetic Map8p23.3NCBI
HuRef81,764,521 - 1,771,207 (+)NCBIHuRef
CHM1_181,921,731 - 1,954,791 (+)NCBICHM1_1
T2T-CHM13v2.081,749,730 - 1,785,512 (+)NCBIT2T-CHM13v2.0
Kbtbd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39815,059,408 - 15,083,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl815,061,025 - 15,083,333 (+)EnsemblGRCm39 Ensembl
GRCm38815,011,025 - 15,033,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl815,011,025 - 15,033,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv37815,011,025 - 15,033,333 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36815,024,296 - 15,033,310 (+)NCBIMGSCv36mm8
MGSCv36815,033,940 - 15,042,954 (+)NCBIMGSCv36mm8
Celera815,175,335 - 15,198,674 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map87.59NCBI
Kbtbd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540357,796,246 - 57,818,666 (-)NCBIChiLan1.0ChiLan1.0
KBTBD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2716,715,732 - 16,748,654 (+)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v085,334,954 - 5,368,004 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KBTBD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1649,804,661 - 49,810,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01661,849,930 - 61,855,443 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11654,444,408 - 54,449,919 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01659,758,325 - 59,763,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01660,142,278 - 60,147,781 (-)NCBIUU_Cfam_GSD_1.0
Kbtbd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049431,116,809 - 1,136,266 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366151,130,826 - 1,132,754 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366151,120,512 - 1,127,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KBTBD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1533,494,430 - 33,497,201 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11533,487,439 - 33,501,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21538,032,678 - 38,051,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KBTBD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.181,634,347 - 1,661,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl81,661,172 - 1,663,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605443,531,837 - 43,563,867 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kbtbd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248611,101,415 - 1,103,340 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248611,085,143 - 1,111,528 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kbtbd11
181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:73
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000016420
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
1298527Arunc2Aerobic running capacity QTL 22.9exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)166853271675029966Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 5 60 27 1
Low 1 22 30 14 14 14 4 5 14 8 40 11 4
Below cutoff 21 25 25 25 4 6 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016420   ⟹   ENSRNOP00000016420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1674,615,792 - 74,637,736 (-)Ensembl
Rnor_6.0 Ensembl1679,696,891 - 79,700,992 (-)Ensembl
RefSeq Acc Id: NM_001107326   ⟹   NP_001100796
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,321,070 - 81,325,171 (-)NCBI
mRatBN7.21674,618,787 - 74,622,888 (-)NCBI
Rnor_6.01679,696,891 - 79,700,992 (-)NCBI
Rnor_5.01679,273,008 - 79,292,584 (-)NCBI
RGSC_v3.41679,428,762 - 79,432,863 (-)RGD
Celera1672,436,737 - 72,440,838 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253390   ⟹   XP_006253452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,318,596 - 81,340,334 (-)NCBI
mRatBN7.21674,618,291 - 74,638,010 (-)NCBI
Rnor_6.01679,696,395 - 79,716,129 (-)NCBI
Rnor_5.01679,273,008 - 79,292,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253391   ⟹   XP_006253453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,318,596 - 81,340,334 (-)NCBI
mRatBN7.21674,618,291 - 74,638,010 (-)NCBI
Rnor_6.01679,696,395 - 79,716,129 (-)NCBI
Rnor_5.01679,273,008 - 79,292,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253392   ⟹   XP_006253454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,318,596 - 81,340,334 (-)NCBI
mRatBN7.21674,618,291 - 74,638,010 (-)NCBI
Rnor_6.01679,696,395 - 79,716,129 (-)NCBI
Rnor_5.01679,273,008 - 79,292,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253393   ⟹   XP_006253455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,318,596 - 81,340,334 (-)NCBI
mRatBN7.21674,618,291 - 74,638,010 (-)NCBI
Rnor_6.01679,696,395 - 79,716,129 (-)NCBI
Rnor_5.01679,273,008 - 79,292,584 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001100796   ⟸   NM_001107326
- UniProtKB: D4A5J1 (UniProtKB/TrEMBL),   A6IWD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253454   ⟸   XM_006253392
- Peptide Label: isoform X1
- UniProtKB: D4A5J1 (UniProtKB/TrEMBL),   A6IWD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253455   ⟸   XM_006253393
- Peptide Label: isoform X1
- UniProtKB: D4A5J1 (UniProtKB/TrEMBL),   A6IWD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253453   ⟸   XM_006253391
- Peptide Label: isoform X1
- UniProtKB: D4A5J1 (UniProtKB/TrEMBL),   A6IWD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253452   ⟸   XM_006253390
- Peptide Label: isoform X1
- UniProtKB: D4A5J1 (UniProtKB/TrEMBL),   A6IWD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016420   ⟸   ENSRNOT00000016420
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5J1-F1-model_v2 AlphaFold D4A5J1 1-633 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563576 AgrOrtholog
BioCyc Gene G2FUF-10752 BioCyc
Ensembl Genes ENSRNOG00000012333 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016420.5 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
KEGG Report rno:306617 UniProtKB/TrEMBL
NCBI Gene 306617 ENTREZGENE
PANTHER BTB_2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 11 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_6 UniProtKB/TrEMBL
PhenoGen Kbtbd11 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012333 RatGTEx
SMART BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF117281 UniProtKB/TrEMBL
UniProt A6IWD2 ENTREZGENE, UniProtKB/TrEMBL
  D4A5J1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Kbtbd11  kelch repeat and BTB domain containing 11  Kbtbd11  kelch repeat and BTB (POZ) domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Kbtbd11  kelch repeat and BTB (POZ) domain containing 11  RGD1563576_predicted  similar to mKIAA0711 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563576_predicted  similar to mKIAA0711 protein (predicted)  LOC306617  similar to mKIAA0711 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306617  similar to mKIAA0711 protein      Symbol and Name status set to provisional 70820 PROVISIONAL