Fam107b (family with sequence similarity 107, member B) - Rat Genome Database

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Gene: Fam107b (family with sequence similarity 107, member B) Rattus norvegicus
Analyze
Symbol: Fam107b
Name: family with sequence similarity 107, member B
RGD ID: 1561482
Description: Predicted to act upstream of or within sensory perception of sound. Orthologous to human FAM107B (family with sequence similarity 107 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498796; LOC498796
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,387,795 - 79,594,165 (-)NCBIGRCr8
mRatBN7.21774,478,608 - 74,685,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,478,608 - 74,684,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1777,938,765 - 78,009,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01781,780,329 - 81,851,051 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01775,822,187 - 75,893,058 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,489,667 - 78,689,933 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,489,668 - 78,561,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,136,083 - 80,336,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,593,001 - 85,663,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1773,868,383 - 73,939,875 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methapyrilene  (EXP,ISO)
N,N-diethyl-m-toluamide  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sotorasib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
topotecan  (EXP)
trametinib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:23870131  


Genomics

Comparative Map Data
Fam107b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,387,795 - 79,594,165 (-)NCBIGRCr8
mRatBN7.21774,478,608 - 74,685,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,478,608 - 74,684,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1777,938,765 - 78,009,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01781,780,329 - 81,851,051 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01775,822,187 - 75,893,058 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,489,667 - 78,689,933 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,489,668 - 78,561,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,136,083 - 80,336,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,593,001 - 85,663,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1773,868,383 - 73,939,875 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
FAM107B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381014,518,557 - 14,774,897 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1014,518,557 - 14,774,897 (-)EnsemblGRCh38hg38GRCh38
GRCh371014,560,556 - 14,816,896 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361014,600,565 - 14,856,902 (-)NCBINCBI36Build 36hg18NCBI36
Build 341014,600,564 - 14,856,902NCBI
Celera1014,488,586 - 14,744,941 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1014,471,705 - 14,727,538 (-)NCBIHuRef
CHM1_11014,561,143 - 14,817,316 (-)NCBICHM1_1
T2T-CHM13v2.01014,531,882 - 14,788,860 (-)NCBIT2T-CHM13v2.0
Fam107b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,705,049 - 3,783,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,571,525 - 3,783,179 (+)EnsemblGRCm39 Ensembl
GRCm3823,704,812 - 3,782,142 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,570,488 - 3,782,142 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,630,730 - 3,699,406 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,630,730 - 3,699,406 (+)NCBIMGSCv36mm8
Celera23,664,349 - 3,733,175 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map22.05NCBI
Fam107b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542919,748,880 - 19,818,453 (+)NCBIChiLan1.0ChiLan1.0
FAM107B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,040,984 - 27,127,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,046,313 - 27,132,538 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01014,518,959 - 14,778,796 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11014,850,008 - 15,107,450 (-)NCBIpanpan1.1PanPan1.1panPan2
FAM107B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,015,294 - 22,085,890 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,859,935 - 22,083,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha219,128,306 - 19,198,903 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,316,822 - 22,387,453 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,161,652 - 22,385,115 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,516,685 - 19,587,340 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0220,351,676 - 20,422,211 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,978,852 - 21,049,515 (+)NCBIUU_Cfam_GSD_1.0
Fam107b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093446,604,896 - 6,803,451 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366131,155,094 - 1,354,026 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM107B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11047,140,776 - 47,223,386 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,715,828 - 51,944,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM107B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,543,038 - 14,800,287 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl914,543,006 - 14,557,450 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,082,142 - 20,096,659 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam107b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624805710,564 - 898,976 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam107b
1785 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:420
Count of miRNA genes:244
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000020220
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177100332581153923Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat

Markers in Region
RH138683  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21774,485,085 - 74,485,251 (+)MAPPERmRatBN7.2
Rnor_6.01778,496,145 - 78,496,310NCBIRnor6.0
Rnor_5.01780,142,561 - 80,142,726UniSTSRnor5.0
RGSC_v3.41785,599,479 - 85,599,644UniSTSRGSC3.4
Celera1773,874,856 - 73,875,021UniSTS
RH 3.4 Map17754.2UniSTS
Cytogenetic Map17q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 50 41 19 41 67 35 41 11
Low 17 7 8 11 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC085116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020220   ⟹   ENSRNOP00000020220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,617 - 74,508,806 (-)Ensembl
Rnor_6.0 Ensembl1778,489,668 - 78,561,613 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079260   ⟹   ENSRNOP00000069346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,608 - 74,505,158 (-)Ensembl
Rnor_6.0 Ensembl1778,491,945 - 78,499,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095863   ⟹   ENSRNOP00000077094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,608 - 74,684,989 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102458   ⟹   ENSRNOP00000081252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,608 - 74,486,755 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105947   ⟹   ENSRNOP00000085064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,608 - 74,540,782 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107038   ⟹   ENSRNOP00000089475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,478,608 - 74,546,301 (-)Ensembl
RefSeq Acc Id: NM_001025034   ⟹   NP_001020205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,795 - 79,458,788 (-)NCBI
mRatBN7.21774,478,608 - 74,549,602 (-)NCBI
Rnor_6.01778,489,667 - 78,561,613 (-)NCBI
Rnor_5.01780,136,083 - 80,336,660 (-)NCBI
RGSC_v3.41785,593,001 - 85,663,908 (-)RGD
Celera1773,868,383 - 73,939,875 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401503   ⟹   NP_001388432
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,795 - 79,449,996 (-)NCBI
mRatBN7.21774,478,608 - 74,540,811 (-)NCBI
RefSeq Acc Id: XM_008771880   ⟹   XP_008770102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,418,316 (-)NCBI
mRatBN7.21774,478,608 - 74,508,833 (-)NCBI
Rnor_6.01778,489,667 - 78,520,725 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771881   ⟹   XP_008770103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,398,007 (-)NCBI
mRatBN7.21774,478,608 - 74,488,814 (-)NCBI
Rnor_6.01778,489,667 - 78,499,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771884   ⟹   XP_008770106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,422,929 (-)NCBI
mRatBN7.21774,478,608 - 74,513,762 (-)NCBI
Rnor_6.01778,489,667 - 78,528,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600646   ⟹   XP_017456135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,594,165 (-)NCBI
mRatBN7.21774,478,608 - 74,684,939 (-)NCBI
Rnor_6.01778,489,667 - 78,689,872 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600647   ⟹   XP_017456136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,391,257 - 79,594,147 (-)NCBI
mRatBN7.21774,485,023 - 74,685,027 (-)NCBI
Rnor_6.01778,494,768 - 78,689,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096026   ⟹   XP_038951954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,415,296 (-)NCBI
mRatBN7.21774,478,608 - 74,506,160 (-)NCBI
RefSeq Acc Id: XM_039096027   ⟹   XP_038951955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,412,009 (-)NCBI
mRatBN7.21774,478,608 - 74,502,825 (-)NCBI
RefSeq Acc Id: XM_063276703   ⟹   XP_063132773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,418,388 (-)NCBI
RefSeq Acc Id: XM_063276704   ⟹   XP_063132774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,387,802 - 79,449,952 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001020205   ⟸   NM_001025034
- Peptide Label: isoform 1
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL),   A0A8I5ZR87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770106   ⟸   XM_008771884
- Peptide Label: isoform X6
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL),   A0A8I5ZR87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770102   ⟸   XM_008771880
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QA46 (UniProtKB/TrEMBL),   A0A8I6A9X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770103   ⟸   XM_008771881
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JV46 (UniProtKB/TrEMBL),   A0A8I5ZR87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456135   ⟸   XM_017600646
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y0Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456136   ⟸   XM_017600647
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000069346   ⟸   ENSRNOT00000079260
RefSeq Acc Id: ENSRNOP00000020220   ⟸   ENSRNOT00000020220
RefSeq Acc Id: XP_038951954   ⟸   XM_039096026
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951955   ⟸   XM_039096027
- Peptide Label: isoform X6
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL),   A0A8I5ZR87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089475   ⟸   ENSRNOT00000107038
RefSeq Acc Id: ENSRNOP00000081252   ⟸   ENSRNOT00000102458
RefSeq Acc Id: ENSRNOP00000085064   ⟸   ENSRNOT00000105947
RefSeq Acc Id: ENSRNOP00000077094   ⟸   ENSRNOT00000095863
RefSeq Acc Id: NP_001388432   ⟸   NM_001401503
- Peptide Label: isoform 1
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132774   ⟸   XM_063276704
- Peptide Label: isoform X6
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132773   ⟸   XM_063276703
- Peptide Label: isoform X6
- UniProtKB: Q5U4F3 (UniProtKB/Swiss-Prot),   A6JM08 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U4F3-F1-model_v2 AlphaFold Q5U4F3 1-131 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700585
Promoter ID:EPDNEW_R11101
Type:multiple initiation site
Name:Fam107b_2
Description:family with sequence similarity 107, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11102  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01778,499,901 - 78,499,961EPDNEW
RGD ID:13700578
Promoter ID:EPDNEW_R11102
Type:single initiation site
Name:Fam107b_1
Description:family with sequence similarity 107, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11101  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01778,561,648 - 78,561,708EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561482 AgrOrtholog
BioCyc Gene G2FUF-8664 BioCyc
Ensembl Genes ENSRNOG00000014886 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018409 UniProtKB/Swiss-Prot
  ENSRNOG00060008080 UniProtKB/Swiss-Prot
  ENSRNOG00065007072 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020220.6 UniProtKB/TrEMBL
  ENSRNOT00000079260.2 UniProtKB/TrEMBL
  ENSRNOT00000095863.1 UniProtKB/TrEMBL
  ENSRNOT00000102458.1 UniProtKB/TrEMBL
  ENSRNOT00000105947 ENTREZGENE
  ENSRNOT00000105947.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107038.1 UniProtKB/TrEMBL
  ENSRNOT00055031298 UniProtKB/Swiss-Prot
  ENSRNOT00060013482 UniProtKB/Swiss-Prot
  ENSRNOT00065011121 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7107468 IMAGE-MGC_LOAD
InterPro FAM107 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498796 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105826 IMAGE-MGC_LOAD
NCBI Gene 498796 ENTREZGENE
PANTHER PROTEIN FAM107B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16768 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1151 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam107b PhenoGen
RatGTEx ENSRNOG00000014886 RatGTEx
  ENSRNOG00055018409 RatGTEx
  ENSRNOG00060008080 RatGTEx
  ENSRNOG00065007072 RatGTEx
UniProt A0A0G2JV46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y0Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZR87 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9X6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QA46 ENTREZGENE, UniProtKB/TrEMBL
  A6JM08 ENTREZGENE, UniProtKB/TrEMBL
  F107B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Fam107b  family with sequence similarity 107, member B  LOC498796  hypothetical protein LOC498796  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498796  hypothetical protein LOC498796      Symbol and Name status set to provisional 70820 PROVISIONAL