Actb-ps6 (actin, beta, pseudogene 6) - Rat Genome Database

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Gene: Actb-ps6 (actin, beta, pseudogene 6) Rattus norvegicus
Analyze
Symbol: Actb-ps6
Name: actin, beta, pseudogene 6
RGD ID: 1560119
Description: INTERACTS WITH Cuprizon
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC298169; RGD1560119; similar to actin alpha 1 skeletal muscle protein
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X126,024,808 - 126,026,024 (-)NCBIGRCr8
mRatBN7.2X121,159,206 - 121,162,455 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X128,678,170 - 128,679,216 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X128,766,595 - 128,769,617 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X2,784,907 - 2,786,286 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX120,273,187 - 120,274,233 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Cuprizon  (EXP)

References

Genomics

Variants

.
Variants in Actb-ps6
29 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat

Markers in Region
AU046333  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,172,635 - 121,172,810 (+)MAPPERmRatBN7.2
Rnor_6.0X128,691,365 - 128,691,539NCBIRnor6.0
Rnor_5.0X128,779,744 - 128,779,918UniSTSRnor5.0
RGSC_v3.4X2,772,981 - 2,773,155UniSTSRGSC3.4
CeleraX120,286,136 - 120,286,310UniSTS
Cytogenetic MapXq11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003752139   ⟹   XP_003752187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0X128,766,667 - 128,785,199 (-)NCBI
RefSeq Acc Id: XM_003754851   ⟹   XP_003754899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX120,273,251 - 120,276,201 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1230 BioCyc
NCBI Gene 298169 ENTREZGENE
PhenoGen Actb-ps6 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Actb-ps6  actin, beta, pseudogene 6  RGD1560119  similar to actin alpha 1 skeletal muscle protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1560119  similar to actin alpha 1 skeletal muscle protein   RGD1560119_predicted  similar to actin alpha 1 skeletal muscle protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560119_predicted  similar to actin alpha 1 skeletal muscle protein (predicted)  LOC298169  similar to actin alpha 1 skeletal muscle protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC298169  similar to actin alpha 1 skeletal muscle protein      Symbol and Name status set to provisional 70820 PROVISIONAL