Gm20683 (predicted gene 20683) - Rat Genome Database

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Gene: Gm20683 (predicted gene 20683) Mus musculus
Analyze
Symbol: Gm20683
Name: predicted gene 20683
RGD ID: 15557668
Description:
Type: protein-coding
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1726,053,439 - 26,060,737 (-)EnsemblGRCm39 Ensembl
GRCm38.p6 Ensembl1725,834,465 - 25,841,763 (-)EnsemblGRCm38mm10GRCm38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:764
Count of miRNA genes:414
Interacting mature miRNAs:494
Transcripts:ENSMUST00000176751
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSMUST00000176751   ⟹   ENSMUSP00000135410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,053,439 - 26,060,737 (-)Ensembl
GRCm38.p6 Ensembl1725,834,465 - 25,841,763 (-)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000135410.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000135410   ⟸   ENSMUST00000176751
Protein Domains
EF-hand   Miro


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093593 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000176751.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_assoc_1 UniProtKB/TrEMBL
  EF_hand_assoc_2 UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  MIRO_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
Pfam EF_assoc_1 UniProtKB/TrEMBL
  EF_assoc_2 UniProtKB/TrEMBL
PhenoGen Gm20683 PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  MIRO UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt H3BKJ1_MOUSE UniProtKB/TrEMBL