Gm24916 (predicted gene, 24916) - Rat Genome Database

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Gene: Gm24916 (predicted gene, 24916) Mus musculus
Analyze
Symbol: Gm24916
Name: predicted gene, 24916
RGD ID: 15556357
MGI Page MGI
Description: INTERACTS WITH silicon dioxide (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115488429; small nucleolar RNA SNORD19B
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,737,105 - 30,737,183 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,737,105 - 30,737,183 (-)EnsemblGRCm39 Ensembl
GRCm381431,015,148 - 31,015,226 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,015,148 - 31,015,226 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm24916
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,737,105 - 30,737,183 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,737,105 - 30,737,183 (-)EnsemblGRCm39 Ensembl
GRCm381431,015,148 - 31,015,226 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,015,148 - 31,015,226 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14BNCBI
SNORD19B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,690,738 - 52,690,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,690,744 - 52,690,827 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,724,754 - 52,724,846 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,699,794 - 52,699,886 (+)NCBINCBI36Build 36hg18NCBI36
Celera352,703,465 - 52,703,557 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,786,593 - 52,786,685 (+)NCBIHuRef
CHM1_1352,676,822 - 52,676,914 (+)NCBICHM1_1
T2T-CHM13v2.0352,723,649 - 52,723,741 (+)NCBIT2T-CHM13v2.0
Snord19b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81152,774,379 - 52,774,449 (-)NCBIGRCr8
mRatBN7.2166,209,752 - 6,209,831 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,209,752 - 6,209,831 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl167,099,930 - 7,100,009 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p16NCBI
LOC119864802
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2037,088,149 - 37,088,230 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,456,918 - 37,456,999 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,456,918 - 37,456,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,820,463 - 36,820,544 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,229,087 - 37,229,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,506,570 - 37,506,651 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24916
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:95
Interacting mature miRNAs:99
Transcripts:ENSMUST00000157287
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,737,105 - 30,737,183 (-)Ensembl
GRCm38.p6 Ensembl1431,015,148 - 31,015,226 (-)Ensembl
RefSeq Acc Id: XR_004938749
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391430,737,105 - 30,737,183 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087912 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157287 ENTREZGENE
MGD MGI:5454693 ENTREZGENE
NCBI Gene LOC115488429 ENTREZGENE
PhenoGen Gm24916 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm24916  predicted gene, 24916  LOC115488429  small nucleolar RNA SNORD19B  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115488429  small nucleolar RNA SNORD19B  Gm24916  predicted gene, 24916  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm24916  predicted gene, 24916  LOC115488429  small nucleolar RNA SNORD19B  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115488429  small nucleolar RNA SNORD19B  Gm24916  predicted gene, 24916  Symbol and/or name change 5135510 APPROVED