Gm23991 (predicted gene, 23991) - Rat Genome Database

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Gene: Gm23991 (predicted gene, 23991) Mus musculus
Analyze
Symbol: Gm23991
Name: predicted gene, 23991
RGD ID: 15554739
MGI Page MGI
Description: INTERACTS WITH 17beta-estradiol (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115486842; small nucleolar RNA SNORD88
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,899,874 - 43,899,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,899,874 - 43,899,966 (+)EnsemblGRCm39 Ensembl
GRCm38744,250,450 - 44,250,542 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,250,450 - 44,250,542 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm23991
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,899,874 - 43,899,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,899,874 - 43,899,966 (+)EnsemblGRCm39 Ensembl
GRCm38744,250,450 - 44,250,542 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,250,450 - 44,250,542 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B3NCBI
SNORD88B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,799,029 - 50,799,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,799,032 - 50,799,122 (-)EnsemblGRCh38hg38GRCh38
GRCh371951,302,286 - 51,302,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,994,098 - 55,994,194 (-)NCBINCBI36Build 36hg18NCBI36
Celera1948,353,243 - 48,353,340 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,636,782 - 47,636,878 (-)NCBIHuRef
CHM1_11951,304,062 - 51,304,158 (-)NCBICHM1_1
T2T-CHM13v2.01953,888,518 - 53,888,614 (-)NCBIT2T-CHM13v2.0
Snord88b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81103,871,483 - 103,871,573 (+)NCBIGRCr8
mRatBN7.2194,734,937 - 94,735,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,734,937 - 94,735,027 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1100,224,872 - 100,224,962 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q22NCBI
LOC119869920
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1105,622,597 - 105,622,689 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,559,940 - 106,560,032 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11106,232,465 - 106,232,557 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,873,932 - 105,874,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,714,546 - 106,714,638 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23991
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:138
Interacting mature miRNAs:144
Transcripts:ENSMUST00000117033
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004934707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000117033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl743,899,874 - 43,899,966 (+)Ensembl
GRCm38.p6 Ensembl744,250,450 - 44,250,542 (+)Ensembl
RefSeq Acc Id: XR_004934707
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,899,874 - 43,899,966 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080683 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000117033 ENTREZGENE
MGD MGI:5453768 ENTREZGENE
NCBI Gene LOC115486842 ENTREZGENE
PhenoGen Gm23991 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm23991  predicted gene, 23991  LOC115486842  small nucleolar RNA SNORD88  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115486842  small nucleolar RNA SNORD88  Gm23991  predicted gene, 23991  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm23991  predicted gene, 23991  LOC115486842  small nucleolar RNA SNORD88  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115486842  small nucleolar RNA SNORD88  Gm23991  predicted gene, 23991  Symbol and/or name change 5135510 APPROVED