Gm22354 (predicted gene, 22354) - Rat Genome Database

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Gene: Gm22354 (predicted gene, 22354) Mus musculus
Analyze
No known orthologs.
Symbol: Gm22354
Name: predicted gene, 22354
RGD ID: 15554323
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115488404; small nucleolar RNA SNORD58
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,306,757 - 52,306,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,306,757 - 52,306,826 (+)EnsemblGRCm39 Ensembl
GRCm381452,069,300 - 52,069,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,069,300 - 52,069,369 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm22354
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:106
Interacting mature miRNAs:109
Transcripts:ENSMUST00000083919
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1452,306,757 - 52,306,826 (+)Ensembl
GRCm38.p6 Ensembl1452,069,300 - 52,069,369 (+)Ensembl
RefSeq Acc Id: XR_004938699
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391452,306,757 - 52,306,826 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065853 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083919 ENTREZGENE
MGD MGI:5452131 ENTREZGENE
NCBI Gene LOC115488404 ENTREZGENE
PhenoGen Gm22354 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm22354  predicted gene, 22354  LOC115488404  small nucleolar RNA SNORD58  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115488404  small nucleolar RNA SNORD58  Gm22354  predicted gene, 22354  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm22354  predicted gene, 22354  LOC115488404  small nucleolar RNA SNORD58  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115488404  small nucleolar RNA SNORD58  Gm22354  predicted gene, 22354  Symbol and/or name change 5135510 APPROVED