Gm25260 (predicted gene, 25260) - Rat Genome Database

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Gene: Gm25260 (predicted gene, 25260) Mus musculus
Analyze
Symbol: Gm25260
Name: predicted gene, 25260
RGD ID: 15554252
MGI Page MGI
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: LOC115490498; U1 spliceosomal RNA; uncharacterized LOC115490498
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,004,027 - 67,004,160 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl667,004,027 - 67,004,160 (+)EnsemblGRCm39 Ensembl
GRCm38667,027,043 - 67,027,176 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,027,043 - 67,027,176 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25260
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,004,027 - 67,004,160 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl667,004,027 - 67,004,160 (+)EnsemblGRCm39 Ensembl
GRCm38667,027,043 - 67,027,176 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,027,043 - 67,027,176 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6C1NCBI
RNVU1-33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38637,915,573 - 37,915,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl637,915,573 - 37,915,742 (+)EnsemblGRCh38hg38GRCh38
GRCh37637,883,349 - 37,883,518 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p21.2NCBI
CHM1_1637,885,211 - 37,885,380 (+)NCBICHM1_1
T2T-CHM13v2.0637,740,309 - 37,740,478 (+)NCBIT2T-CHM13v2.0
LOC120103213
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,708,579 - 166,708,736 (+)NCBIGRCr8
mRatBN7.25161,425,753 - 161,425,910 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,425,753 - 161,425,910 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl5168,053,558 - 168,053,715 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map5q36NCBI
LOC119867234
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3231,179,491 - 31,179,655 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,826,419 - 10,826,583 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,826,419 - 10,826,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,907,807 - 10,907,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,735,785 - 10,735,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,219,015 - 29,219,179 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:125
Interacting mature miRNAs:127
Transcripts:ENSMUST00000083053
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC107650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,004,027 - 67,004,160 (+)Ensembl
GRCm38.p6 Ensembl667,027,043 - 67,027,176 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064987 Ensembl, ENTREZGENE
MGD MGI:5455037 ENTREZGENE
NCBI Gene LOC115490498 ENTREZGENE
PhenoGen Gm25260 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm25260  predicted gene, 25260  LOC115490498  uncharacterized LOC115490498  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115490498  uncharacterized LOC115490498  Gm25260  predicted gene, 25260  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm25260  predicted gene, 25260  LOC115490498  U1 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115490498  U1 spliceosomal RNA  Gm25260  predicted gene, 25260  Symbol and/or name change 5135510 APPROVED