Gm25296 (predicted gene, 25296) - Rat Genome Database

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Gene: Gm25296 (predicted gene, 25296) Mus musculus
Analyze
Symbol: Gm25296
Name: predicted gene, 25296
RGD ID: 15554211
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115485831; small nucleolar RNA SNORD95
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,691,692 - 48,691,759 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,691,693 - 48,691,759 (+)EnsemblGRCm39 Ensembl
GRCm381148,800,865 - 48,800,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,800,866 - 48,800,932 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B1.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25296
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,691,692 - 48,691,759 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,691,693 - 48,691,759 (+)EnsemblGRCm39 Ensembl
GRCm381148,800,865 - 48,800,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,800,866 - 48,800,932 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B1.2NCBI
LOC124900283
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38981,888,918 - 81,888,985 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl981,888,918 - 81,888,985 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map9q21.32NCBI
T2T-CHM13v2.0994,038,544 - 94,038,611 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm25296
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:137
Interacting mature miRNAs:138
Transcripts:ENSMUST00000082566
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,691,693 - 48,691,759 (+)Ensembl
GRCm38.p6 Ensembl1148,800,866 - 48,800,932 (+)Ensembl
RefSeq Acc Id: XR_004937323
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,691,692 - 48,691,759 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064500 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082566 ENTREZGENE
MGD MGI:5455073 ENTREZGENE
NCBI Gene LOC115485831 ENTREZGENE
PhenoGen Gm25296 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm25296  predicted gene, 25296  LOC115485831  small nucleolar RNA SNORD95  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115485831  small nucleolar RNA SNORD95  Gm25296  predicted gene, 25296  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm25296  predicted gene, 25296  LOC115485831  small nucleolar RNA SNORD95  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115485831  small nucleolar RNA SNORD95  Gm25296  predicted gene, 25296  Symbol and/or name change 5135510 APPROVED