Gm26447 (predicted gene, 26447) - Rat Genome Database

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Gene: Gm26447 (predicted gene, 26447) Mus musculus
Analyze
Symbol: Gm26447
Name: predicted gene, 26447
RGD ID: 15554200
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115488689; small nucleolar RNA SNORA63
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391622,930,051 - 22,930,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1622,930,051 - 22,930,179 (+)EnsemblGRCm39 Ensembl
GRCm381623,111,301 - 23,111,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1623,111,301 - 23,111,429 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26447
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391622,930,051 - 22,930,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1622,930,051 - 22,930,179 (+)EnsemblGRCm39 Ensembl
GRCm381623,111,301 - 23,111,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1623,111,301 - 23,111,429 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16B1NCBI
SNORA63C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,418,448 - 36,418,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,418,450 - 36,418,578 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,884,049 - 36,884,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p34.3NCBI
T2T-CHM13v2.0136,281,308 - 36,281,438 (-)NCBIT2T-CHM13v2.0
LOC119873477
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha951,517,131 - 51,517,256 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,145,614 - 53,145,739 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,145,614 - 53,145,739 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1951,925,337 - 51,925,462 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,250,195 - 52,250,320 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,336,149 - 52,336,274 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm26447
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:36
Interacting mature miRNAs:40
Transcripts:ENSMUST00000082448
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1622,930,051 - 22,930,179 (+)Ensembl
GRCm38.p6 Ensembl1623,111,301 - 23,111,429 (+)Ensembl
RefSeq Acc Id: XR_004939376
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391622,930,051 - 22,930,179 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064382 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082448 ENTREZGENE
MGD MGI:5456224 ENTREZGENE
NCBI Gene LOC115488689 ENTREZGENE
PhenoGen Gm26447 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm26447  predicted gene, 26447  LOC115488689  small nucleolar RNA SNORA63  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115488689  small nucleolar RNA SNORA63  Gm26447  predicted gene, 26447  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm26447  predicted gene, 26447  LOC115488689  small nucleolar RNA SNORA63  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115488689  small nucleolar RNA SNORA63  Gm26447  predicted gene, 26447  Symbol and/or name change 5135510 APPROVED