ANAPC1P4 (ANAPC1 pseudogene 4) - Rat Genome Database

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Gene: ANAPC1P4 (ANAPC1 pseudogene 4) Homo sapiens
Analyze
Symbol: ANAPC1P4
Name: ANAPC1 pseudogene 4
RGD ID: 15041668
HGNC Page HGNC:54710
Description: INTERACTS WITH acrylamide
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: ANAPC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38287,700,983 - 87,739,249 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl287,700,984 - 87,738,105 (+)EnsemblGRCh38hg38GRCh38
GRCh37288,000,502 - 88,038,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p11.2NCBI
HuRef287,064,082 - 87,077,005 (+)NCBIHuRef
CHM1_1287,945,556 - 87,975,385 (+)NCBICHM1_1
T2T-CHM13v2.0287,712,969 - 87,751,239 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acrylamide  (EXP)

References

Genomics

Variants

.
Variants in ANAPC1P4
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:319
Interacting mature miRNAs:344
Transcripts:ENST00000427434, ENST00000540487
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 2 2 1 7 1 3 5 12 6 5 10 1
Low 1115 2181 1072 237 1136 155 2665 700 1112 199 730 1392 95 1160 1585 3
Below cutoff 1300 780 614 351 429 275 1665 1464 2460 187 670 192 75 44 1184 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000427434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl287,700,984 - 87,738,105 (+)Ensembl
RefSeq Acc Id: NR_160651
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38287,700,983 - 87,739,249 (+)NCBI
T2T-CHM13v2.0287,712,969 - 87,751,239 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC ANAPC1P4 COSMIC
Ensembl Genes ENSG00000234231 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000427434 ENTREZGENE
GTEx ENSG00000234231 GTEx
HGNC ID HGNC:54710 ENTREZGENE
Human Proteome Map ANAPC1P4 Human Proteome Map
NCBI Gene ANAPC1P4 ENTREZGENE