AABR07030494.1 (null) - Rat Genome Database

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Gene: AABR07030494.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07030494.1
Name:
RGD ID: 15005844
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be located in clathrin-coated vesicle membrane; synaptic vesicle membrane; and vacuolar membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1087,574,943 - 87,575,317 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1090,569,201 - 90,569,575 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:88
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000074987
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 30 6 6 1 6 1 2 31 29 31 10 1
Below cutoff 2 10 25 14 10 14 3 3 32 6 7 1 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074987   ⟹   ENSRNOP00000065820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1087,574,943 - 87,575,317 (-)Ensembl
Rnor_6.0 Ensembl1090,569,201 - 90,569,575 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000065820.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000065820   ⟸   ENSRNOT00000074987
Protein Domains
V-ATPase proteolipid subunit C-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8M1-F1-model_v2 AlphaFold M0R8M1 1-124 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000049929 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074987.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.610 UniProtKB/TrEMBL
InterPro ATPase_proteolipid_c-like_dom UniProtKB/TrEMBL
  ATPase_proteolipid_csu UniProtKB/TrEMBL
  ATPase_proteolipid_su_C_euk UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/TrEMBL
PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/TrEMBL
PhenoGen AABR07030494.1 PhenoGen
PRINTS VACATPASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049929 RatGTEx
Superfamily-SCOP SSF81333 UniProtKB/TrEMBL
UniProt M0R8M1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07030494.1        Symbol and Name status set to provisional 45752 PROVISIONAL