AABR07066416.2 (null) - Rat Genome Database

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Gene: AABR07066416.2 (null) Rattus norvegicus
Analyze
Symbol: AABR07066416.2
Name:
RGD ID: 15004962
Description: Predicted to enable calcium ion binding activity.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl93,085,489 - 3,086,931 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl98,660,947 - 8,661,941 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:97
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000072991
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3
Low 11 3 3 3 1 1 9 7 1 1
Below cutoff 5 10 5 11 5 6 6 4 6 2 6 6

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl93,085,489 - 3,086,931 (+)Ensembl
Rnor_6.0 Ensembl98,660,947 - 8,661,941 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000095726.1
Reference Protein Sequences
Protein Domains
EF-hand

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046104 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072991.3 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
PANTHER RETICULOCALBIN UniProtKB/TrEMBL
  RETICULOCALBIN-1 UniProtKB/TrEMBL
PhenoGen AABR07066416.2 PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046104 RatGTEx
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8I6APQ6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07066416.2        Symbol and Name status set to provisional 45752 PROVISIONAL