AABR07025819.1 (null) - Rat Genome Database

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Gene: AABR07025819.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07025819.1
Name:
RGD ID: 15004321
Description: Predicted to enable proton transmembrane transporter activity. Predicted to be involved in proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o).
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1648,628,407 - 48,628,892 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1651,816,533 - 51,817,018 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:61
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000059185
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 8 14 3 11 3 6 8 4 3 7 9 6
Below cutoff 1 4 13 8 8 8 2 2 10 11 9 2 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1651,816,533 - 51,817,018 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000082121.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000038744 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059185.4 UniProtKB/TrEMBL
Gene3D-CATH 6.10.280.70 UniProtKB/TrEMBL
InterPro ATP_synth_F0_dsu_mt UniProtKB/TrEMBL
  ATP_synth_F0_dsu_sf_mt UniProtKB/TrEMBL
PANTHER ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12700 UniProtKB/TrEMBL
Pfam Mt_ATP-synt_D UniProtKB/TrEMBL
PhenoGen AABR07025819.1 PhenoGen
PIRSF ATPase_F0_D_mt UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038744 RatGTEx
Superfamily-SCOP SSF161065 UniProtKB/TrEMBL
UniProt A0A8I5ZWF8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07025819.1        Symbol and Name status set to provisional 45752 PROVISIONAL