AABR07047835.1 (null) - Rat Genome Database

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Gene: AABR07047835.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07047835.1
Name:
RGD ID: 15003556
Description: Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane.
Type: pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl548,925,362 - 48,927,475 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl549,821,254 - 49,822,878 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:33
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000038090
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 2 2 2 1 2 3 2 2 3
Below cutoff 2 1 3 1 1 9 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000038090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl548,925,362 - 48,927,475 (+)Ensembl
Rnor_6.0 Ensembl549,821,254 - 49,822,878 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000090217.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000023101 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038090.3 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
PANTHER CHONDROITIN SULFATE N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
  CHONDROITIN SYNTHASE UniProtKB/TrEMBL
Pfam CHGN UniProtKB/TrEMBL
PhenoGen AABR07047835.1 PhenoGen
RatGTEx ENSRNOG00000023101 RatGTEx
UniProt A0A8I6AML2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07047835.1        Symbol and Name status set to provisional 45752 PROVISIONAL