AC121639.1 (null) - Rat Genome Database

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Pathways
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Gene: AC121639.1 (null) Rattus norvegicus
Analyze
Symbol: AC121639.1
Name:
RGD ID: 15003493
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl180,970,586 - 80,971,373 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl182,253,005 - 82,253,792 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:95
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000027854
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1
Low 2 35 15 16 8 11 44 13 28 10 8
Below cutoff 1 8 21 20 3 20 22 20 10

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027854   ⟹   ENSRNOP00000027854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,970,586 - 80,971,373 (+)Ensembl
Rnor_6.0 Ensembl182,253,005 - 82,253,792 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000027854.4
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000027854   ⟸   ENSRNOT00000027854

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8F4-F1-model_v2 AlphaFold D3Z8F4 1-146 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000020538 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027854.4 UniProtKB/TrEMBL
PhenoGen AC121639.1 PhenoGen
RatGTEx ENSRNOG00000020538 RatGTEx
UniProt D3Z8F4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC121639.1        Symbol and Name status set to provisional 45752 PROVISIONAL