AABR07060577.1 (null) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AABR07060577.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07060577.1
Name:
RGD ID: 15003426
Description: Predicted to be involved in intracellular protein transport and protein targeting. Predicted to be part of mitochondrial outer membrane translocase complex.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl480,602,895 - 80,603,836 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl481,301,995 - 81,302,432 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:83
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000020546
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

musculoskeletal system reproductive system
High
Medium
Low 7
Below cutoff 2 9

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,602,895 - 80,603,836 (+)Ensembl
Rnor_6.0 Ensembl481,301,995 - 81,302,432 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000084713.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000015328 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020546.5 UniProtKB/TrEMBL
Gene3D-CATH Mitochondrial outer membrane translocase complex, subunit Tom20 domain UniProtKB/TrEMBL
InterPro MAS20 UniProtKB/TrEMBL
  MAS20_rcpt_metazoan UniProtKB/TrEMBL
  Tom20_dom_sf UniProtKB/TrEMBL
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 UniProtKB/TrEMBL
  MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG UniProtKB/TrEMBL
Pfam MAS20 UniProtKB/TrEMBL
PhenoGen AABR07060577.1 PhenoGen
PIRSF MAS20_rcpt UniProtKB/TrEMBL
PRINTS EUOM20RECPTR UniProtKB/TrEMBL
  OM20RECEPTOR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015328 RatGTEx
Superfamily-SCOP Mitochondrial import receptor subunit Tom20 UniProtKB/TrEMBL
UniProt A0A8I5ZZX1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07060577.1        Symbol and Name status set to provisional 45752 PROVISIONAL