AABR07062753.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07062753.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07062753.1
Name:
RGD ID: 15003276
Description: Predicted to be part of proteasome activator complex.
Type: pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl611,713,966 - 11,714,477 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl66,180,033 - 6,180,793 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:116
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000005562
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2
Below cutoff 7 19 10 8 10 2 2 29 12 22 4 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl611,713,966 - 11,714,477 (-)Ensembl
Rnor_6.0 Ensembl66,180,033 - 6,180,793 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000088476.1
Reference Protein Sequences
Protein Domains
Proteasome activator PA28 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000004199 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005562.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.120 UniProtKB/TrEMBL
InterPro PA28_N_sf UniProtKB/TrEMBL
  Proteasome_activ_PA28 UniProtKB/TrEMBL
  Proteasome_activ_PA28_N UniProtKB/TrEMBL
  Proteasome_activ_sf UniProtKB/TrEMBL
PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR10660 UniProtKB/TrEMBL
Pfam PA28_alpha UniProtKB/TrEMBL
PhenoGen AABR07062753.1 PhenoGen
RatGTEx ENSRNOG00000004199 RatGTEx
Superfamily-SCOP SSF47216 UniProtKB/TrEMBL
UniProt A0A8I6AA17_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07062753.1        Symbol and Name status set to provisional 45752 PROVISIONAL