AABR07034767.1 (null) - Rat Genome Database

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Gene: AABR07034767.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07034767.1
Name:
RGD ID: 15003233
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1188,912,599 - 88,972,176 (-)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Plakophilin-2 loss promotes TGF-beta1/p38 MAPK-dependent fibrotic gene expression in cardiomyocytes. Dubash AD, etal., J Cell Biol. 2016 Feb 15;212(4):425-38. doi: 10.1083/jcb.201507018. Epub 2016 Feb 8.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Mechanistic insights into arrhythmogenic right ventricular cardiomyopathy caused by desmocollin-2 mutations. Gehmlich K, etal., Cardiovasc Res. 2011 Apr 1;90(1):77-87. doi: 10.1093/cvr/cvq353. Epub 2010 Nov 9.
4. A novel desmocollin-2 mutation reveals insights into the molecular link between desmosomes and gap junctions. Gehmlich K, etal., Heart Rhythm. 2011 May;8(5):711-8. doi: 10.1016/j.hrthm.2011.01.010. Epub 2011 Jan 7.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 2 2 2 1 26 1 8
Low 52 39 11 39 8 11 69 9 34 3 8
Below cutoff 3 8 4 5

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002498   ⟹   ENSRNOP00000002498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1184,661,783 - 84,727,730 (-)Ensembl
Rnor_6.0 Ensembl1188,912,599 - 88,972,176 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103562   ⟹   ENSRNOP00000088522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1184,661,783 - 84,727,730 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M7L9-F1-model_v2 AlphaFold F1M7L9 1-792 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000001825 Ensembl
PhenoGen AABR07034767.1 PhenoGen
RatGTEx ENSRNOG00000001825 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07034767.1        Symbol and Name status set to provisional 45752 PROVISIONAL