AABR07033045.1 (null) - Rat Genome Database

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Gene: AABR07033045.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07033045.1
Name:
RGD ID: 15003213
Description: Predicted to enable GTP binding activity.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl113,453,464 - 3,454,395 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl112,785,908 - 2,786,363 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function
GTP binding  (IEA)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:90
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000000903
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 7 12 1 17 1 3 3 9 3 5 10 3
Below cutoff 3 13 8 1 8 4 6 6 6 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000000903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl113,453,464 - 3,454,395 (-)Ensembl
Rnor_6.0 Ensembl112,785,908 - 2,786,363 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000083590.1
Reference Protein Sequences
Protein Domains
Septin-type G

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000000713 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000903.7 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
PANTHER SEPTIN UniProtKB/TrEMBL
  SEPTIN-7 UniProtKB/TrEMBL
Pfam Septin UniProtKB/TrEMBL
PhenoGen AABR07033045.1 PhenoGen
PROSITE G_SEPTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000713 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZW51_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07033045.1        Symbol and Name status set to provisional 45752 PROVISIONAL