Gm25682 (predicted gene, 25682) - Rat Genome Database

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Gene: Gm25682 (predicted gene, 25682) Mus musculus
Analyze
Symbol: Gm25682
Name: predicted gene, 25682
RGD ID: 15002742
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39109,976,697 - 9,976,860 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl109,976,697 - 9,976,860 (+)EnsemblGRCm39 Ensembl
GRCm381010,100,953 - 10,101,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,100,953 - 10,101,116 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25682
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39109,976,697 - 9,976,860 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl109,976,697 - 9,976,860 (+)EnsemblGRCm39 Ensembl
GRCm381010,100,953 - 10,101,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,100,953 - 10,101,116 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
RNU1-67P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,423,742 - 119,423,905 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,423,742 - 119,423,905 (+)EnsemblGRCh38hg38GRCh38
GRCh37X118,557,705 - 118,557,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq24NCBI
CHM1_1X118,468,893 - 118,469,056 (+)NCBICHM1_1
T2T-CHM13v2.0X117,801,466 - 117,801,629 (+)NCBIT2T-CHM13v2.0
LOC119867539
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3438,317,768 - 38,317,895 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03429,319,375 - 29,319,502 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3429,319,375 - 29,319,502 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13429,258,170 - 29,258,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03429,207,425 - 29,207,552 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03429,484,187 - 29,484,314 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25682
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:17
Interacting mature miRNAs:17
Transcripts:ENSMUST00000083942
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,976,697 - 9,976,860 (+)Ensembl
GRCm38.p6 Ensembl1010,100,953 - 10,101,116 (+)Ensembl
RefSeq Acc Id: XR_004936576
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,976,697 - 9,976,860 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065876 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083942 ENTREZGENE
MGD MGI:5455459 ENTREZGENE
NCBI Gene Gm25682 ENTREZGENE
PhenoGen Gm25682 PhenoGen