Gm25831 (predicted gene, 25831) - Rat Genome Database

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Gene: Gm25831 (predicted gene, 25831) Mus musculus
Analyze
Symbol: Gm25831
Name: predicted gene, 25831
RGD ID: 15002045
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391498,205,265 - 98,205,427 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1498,205,265 - 98,205,427 (-)EnsemblGRCm39 Ensembl
GRCm381497,967,829 - 97,967,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1497,967,829 - 97,967,991 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14E2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25831
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391498,205,265 - 98,205,427 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1498,205,265 - 98,205,427 (-)EnsemblGRCm39 Ensembl
GRCm381497,967,829 - 97,967,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1497,967,829 - 97,967,991 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14E2.1NCBI
RNU1-93P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,133,462 - 231,133,630 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,133,462 - 231,133,630 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,998,176 - 231,998,344 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q37.1NCBI
CHM1_12232,003,710 - 232,003,878 (+)NCBICHM1_1
T2T-CHM13v2.02231,617,968 - 231,618,136 (+)NCBIT2T-CHM13v2.0
LOC119869896
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1119,250,480 - 119,250,640 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,452,787 - 120,452,947 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,452,787 - 120,452,947 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,015,054 - 120,015,214 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,634,149 - 119,634,309 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,695,556 - 120,695,716 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25831
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSMUST00000158924
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
13524530Bodwtq11_mbody wweight QTL 11 (mouse)1487767629102538219Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000158924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1498,205,265 - 98,205,427 (-)Ensembl
GRCm38.p6 Ensembl1497,967,829 - 97,967,991 (-)Ensembl
RefSeq Acc Id: XR_004938750
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391498,205,265 - 98,205,427 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089549 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158924 ENTREZGENE
MGD MGI:5455608 ENTREZGENE
NCBI Gene Gm25831 ENTREZGENE
PhenoGen Gm25831 PhenoGen