Gm23790 (predicted gene, 23790) - Rat Genome Database

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Gene: Gm23790 (predicted gene, 23790) Mus musculus
Analyze
Symbol: Gm23790
Name: predicted gene, 23790
RGD ID: 15001102
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391031,039,522 - 31,039,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1031,039,522 - 31,039,628 (-)EnsemblGRCm39 Ensembl
GRCm381031,163,526 - 31,163,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1031,163,526 - 31,163,632 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23790
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391031,039,522 - 31,039,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1031,039,522 - 31,039,628 (-)EnsemblGRCm39 Ensembl
GRCm381031,163,526 - 31,163,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1031,163,526 - 31,163,632 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A4NCBI
RNU6-1007P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38288,414,898 - 88,415,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl288,414,898 - 88,415,004 (-)EnsemblGRCh38hg38GRCh38
GRCh37288,714,417 - 88,714,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p11.2NCBI
CHM1_1288,643,753 - 88,643,859 (-)NCBICHM1_1
T2T-CHM13v2.0288,426,900 - 88,427,006 (-)NCBIT2T-CHM13v2.0
LOC120097304
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,673,935 - 13,674,040 (+)NCBIGRCr8
mRatBN7.21511,243,442 - 11,243,547 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1511,243,442 - 11,243,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1512,549,260 - 12,549,365 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p16NCBI

Variants

.
Variants in Gm23790
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:16
Interacting mature miRNAs:16
Transcripts:ENSMUST00000083013
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1031,163,526 - 31,163,632 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1031,039,522 - 31,039,628 (-)Ensembl
RefSeq Acc Id: XR_004936649
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391031,039,522 - 31,039,628 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095305 Ensembl
  ENSMUSG00000118948 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240069 ENTREZGENE
MGD MGI:5453567 ENTREZGENE
NCBI Gene Gm23790 ENTREZGENE
PhenoGen Gm23790 PhenoGen