Gm23483 (predicted gene, 23483) - Rat Genome Database

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Gene: Gm23483 (predicted gene, 23483) Mus musculus
Analyze
Symbol: Gm23483
Name: predicted gene, 23483
RGD ID: 14999683
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,878,639 - 4,878,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,878,639 - 4,878,746 (-)EnsemblGRCm39 Ensembl
GRCm38165,060,775 - 5,060,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,060,775 - 5,060,882 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23483
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,878,639 - 4,878,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,878,639 - 4,878,746 (-)EnsemblGRCm39 Ensembl
GRCm38165,060,775 - 5,060,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,060,775 - 5,060,882 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16A1NCBI
RNU6-508P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38259,647,621 - 59,647,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl259,647,621 - 59,647,723 (+)EnsemblGRCh38hg38GRCh38
GRCh37259,874,756 - 59,874,858 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p16.1NCBI
CHM1_1259,804,723 - 59,804,825 (+)NCBICHM1_1
T2T-CHM13v2.0259,653,291 - 59,653,393 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm23483
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:67
Interacting mature miRNAs:68
Transcripts:ENSMUST00000104179
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl164,878,639 - 4,878,746 (-)Ensembl
GRCm38.p6 Ensembl165,060,775 - 5,060,882 (-)Ensembl
RefSeq Acc Id: XR_004939441
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39164,878,639 - 4,878,746 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077367 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104179 ENTREZGENE
MGD MGI:5453260 ENTREZGENE
NCBI Gene Gm23483 ENTREZGENE
PhenoGen Gm23483 PhenoGen