Gm25131 (predicted gene, 25131) - Rat Genome Database

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Gene: Gm25131 (predicted gene, 25131) Mus musculus
Analyze
Symbol: Gm25131
Name: predicted gene, 25131
RGD ID: 14999549
MGI Page MGI
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,923,844 - 80,923,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,923,844 - 80,923,994 (+)EnsemblGRCm39 Ensembl
GRCm381581,039,643 - 81,039,793 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,039,643 - 81,039,793 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25131
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,923,844 - 80,923,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,923,844 - 80,923,994 (+)EnsemblGRCm39 Ensembl
GRCm381581,039,643 - 81,039,793 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,039,643 - 81,039,793 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15E1NCBI
RNU4-55P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811105,824,634 - 105,824,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11105,824,634 - 105,824,770 (+)EnsemblGRCh38hg38GRCh38
GRCh3711105,695,360 - 105,695,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q22.3NCBI
CHM1_111105,578,524 - 105,578,660 (+)NCBICHM1_1
T2T-CHM13v2.011105,828,877 - 105,829,013 (+)NCBIT2T-CHM13v2.0
LOC120102773
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84176,443,978 - 176,444,170 (-)NCBIGRCr8
mRatBN7.24174,712,840 - 174,713,071 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4174,712,840 - 174,713,071 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl4174,712,840 - 174,713,071 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4175,972,412 - 175,972,613 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map4q44NCBI
LOC119873520
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha946,406,773 - 46,406,877 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,088,559 - 48,088,663 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,088,559 - 48,088,663 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,853,556 - 46,853,660 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,154,574 - 47,154,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,211,847 - 47,211,951 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25131
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:162
Interacting mature miRNAs:169
Transcripts:ENSMUST00000082653
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC141880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1580,923,844 - 80,923,994 (+)Ensembl
GRCm38.p6 Ensembl1581,039,643 - 81,039,793 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064587 Ensembl, ENTREZGENE
MGD MGI:5454908 ENTREZGENE
NCBI Gene Gm25131 ENTREZGENE
PhenoGen Gm25131 PhenoGen