Gm22003 (predicted gene, 22003) - Rat Genome Database

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Gene: Gm22003 (predicted gene, 22003) Mus musculus
Analyze
Symbol: Gm22003
Name: predicted gene, 22003
RGD ID: 14999488
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,808,547 - 4,808,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,808,547 - 4,808,653 (+)EnsemblGRCm39 Ensembl
GRCm38124,758,547 - 4,758,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,758,547 - 4,758,653 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:69
Interacting mature miRNAs:71
Transcripts:ENSMUST00000101885
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT025683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000101885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl124,758,547 - 4,758,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,808,547 - 4,808,653 (+)Ensembl
RefSeq Acc Id: XR_004937901
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,808,547 - 4,808,653 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000075833 Ensembl
  ENSMUSG00000119679 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240284 ENTREZGENE
MGD MGI:5451780 ENTREZGENE
NCBI Gene Gm22003 ENTREZGENE
PhenoGen Gm22003 PhenoGen