Gm22249 (predicted gene, 22249) - Rat Genome Database

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Gene: Gm22249 (predicted gene, 22249) Mus musculus
Analyze
Symbol: Gm22249
Name: predicted gene, 22249
RGD ID: 14998165
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,703,801 - 38,703,936 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,703,801 - 38,703,936 (+)EnsemblGRCm39 Ensembl
GRCm38538,546,458 - 38,546,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,546,458 - 38,546,593 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22249
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,703,801 - 38,703,936 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,703,801 - 38,703,936 (+)EnsemblGRCm39 Ensembl
GRCm38538,546,458 - 38,546,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,546,458 - 38,546,593 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5B3NCBI
RNU4-35P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386121,453,981 - 121,454,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6121,453,981 - 121,454,121 (-)EnsemblGRCh38hg38GRCh38
GRCh376121,775,127 - 121,775,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q22.31NCBI
CHM1_16122,038,933 - 122,039,073 (-)NCBICHM1_1
T2T-CHM13v2.06122,641,035 - 122,641,175 (-)NCBIT2T-CHM13v2.0
LOC120094040
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,298,232 - 69,298,390 (+)NCBIGRCr8
mRatBN7.2767,413,118 - 67,413,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,413,118 - 67,413,276 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl767,413,118 - 67,413,276 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl775,046,042 - 75,046,203 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q22NCBI
LOC119869942
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha175,094,320 - 75,094,441 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,637,588 - 74,637,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,637,588 - 74,637,709 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,446,252 - 74,446,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,214,936 - 74,215,117 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,918,265 - 74,918,386 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22249
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:109
Interacting mature miRNAs:117
Transcripts:ENSMUST00000082485
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53695734445457342Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53695734445457342Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53695734445457342Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53695734445457342Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53695734445457342Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53695734445457342Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53695734445457342Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53695734445457342Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53695734445457342Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53695734445457342Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC171271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,703,801 - 38,703,936 (+)Ensembl
GRCm38.p6 Ensembl538,546,458 - 38,546,593 (+)Ensembl
RefSeq Acc Id: XR_004942874
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,703,801 - 38,703,936 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064419 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082485 ENTREZGENE
MGD MGI:5452026 ENTREZGENE
NCBI Gene Gm22249 ENTREZGENE
PhenoGen Gm22249 PhenoGen